AT3G19340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3754) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: aminopeptidases (TAIR:AT5G13940.1); Has 308 Blast hits to 303 proteins in 113 species: Archae - 0; Bacteria - 164; Metazoa - 10; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6701387..6704071 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56791.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEQHNKEVI RLEPESVIPI LKPKLIMTLA NLIEHSNDRQ EFLKLCKRIE YTVRAWYLLQ FEDLMQLYSL FDPVHGAQKI QQQNLTSQEI DVLEQNFLAY 101: LFQVMEKSNF KITSNEEMEV AHSGQYLLNL PIKVDESKLD KKLLKRYFEE HPHENIPDFS DKYVIFRRGI GLDKTTDYFF MEKLDVIISR FWSFLMRITR 201: LEKLRAKRSS SLNKKDPKKD DEPNPDTDND ELYVERIRLE NSKLSFKSFL SKLTIQEPTF DRMIVVYRRA SSKTNLERGI YVKHFKNIPM ADMEIVLPEK 301: RNPGLTPMDW VKFLISAVVG LVAVLTSVEM PKSDPWVIIA ILSTVLGYCA KTYFTFQQNM ATYQNLITQS MYDKQLDSGR GTLLHLCDDV IQQEVKEVMI 401: CFYILMEQGK ATLEDLDLRC EELIKEEFGA RCNFDVEDAV QKLEKLGIVA RDTIGRYYCM GLKRANEIIG TTTEELVLKA KQGVTPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)