AT3G19310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 454 Blast hits to 451 proteins in 104 species: Archae - 0; Bacteria - 82; Metazoa - 4; Fungi - 158; Plants - 154; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6694260..6696193 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45863.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFQRFTFFLT ALLIPCILII LSPSYALKEG ETCIVSKNCD RGLHCESCLA SDSFRPRCSR MQPINPTTKV KGLPYNKYSW LTTHNSFARM GAKSGTGSMI 101: LAPSNQQDSI TSQLLNGVRG FMLDLYDFQN DIWLCHSYGG NCFNYTAFQP AVNILKEFQV FLDKNKDVVV TLILEDYVKS PNGLTRVFDA SGLRNFMFPV 201: SRMPKNGEDW PTLDDMICQN QRLLVFTSNP QKEASEGIAF MWRYMIENQY GDGGMKAGVC TNRPESVAMG DRSRSLILVN YFPDTADVIG SCKQNSAPLL 301: DTVKNCQEAS GKRWPNFIAV DFYKRSDGGG APKAVDVANG HAVCGCEDIA ACKENMPYGT CEKQEEKKPE SNLMMIAKLT AEATKGYGHP STKPTLLGLS 401: VFVVTFVSLL STF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)