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AT3G19240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23543785 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23543785 (2013): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar import/degradation, Vid27-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT4G33400.1); Has 312 Blast hits to 307 proteins in 136 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 168; Plants - 82; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5167eggNOG:KOG2395EMBL:AP000419EMBL:CP002686EnsemblPlants:AT3G19240EnsemblPlants:AT3G19240.1entrez:821458
Gene3D:2.130.10.10GeneID:821458Gramene:AT3G19240.1hmmpanther:PTHR31913hmmpanther:PTHR31913:SF1HOGENOM:HOG000239561InterPro:IPR013863
InterPro:IPR015943KEGG:ath:AT3G19240OMA:PKAKWIVPfam:PF08553PhylomeDB:Q9LJK5Proteomes:UP000006548RefSeq:NP_188555.1
SMR:Q9LJK5STRING:3702.AT3G19240.1SUPFAM:0049172TAIR:AT3G19240UniGene:At.23191UniProt:Q9LJK5
Coordinates (TAIR10) chr3:+:6664383..6666423
Molecular Weight (calculated) 72288.50 Da
IEP (calculated) 5.39
GRAVY (calculated) -0.65
Length 648 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTSQSREDR ISESDTESDS DYYEEEDEDQ YDDAKKQGSS SVSGTRPSDS SSSSGPTDSS SLDIEQKLKA LKLKYPSSSS VTPKMKNAVK LYRHIGGNTP
101: KAKWIVSDKM TSYKFVKTSS VDGEDIDDYD DCEESGEGGE SFWFLGVGTK VKARVSTDMQ LKMFGDQRRV DFVSNGVWAL KFLTDEDYRK FVTRFQDYLF
201: ENVYKIRASE ENRVKVYGKD FIGWANPEAA DDSMWEDAEA PPEEEETQGK RNTDLTEEFE EVANGGVQSL TLGALDNSFL VNDYGVQVYR NMERGIHGKG
301: VCVRFDSGNS KFGSGSSQTT PNKALLMRAE TNMMLMSPAK QGKPNSTGVK QLDIESGKIV TEWKFEKDGT EITMRDITND TKGSQLDPSE STFLGLDDNR
401: LCQWDMRDRR GIVQNIDSPI LEWTQGHQFS RGTNFQCFAT TGDGSIVVGS LDGKIRLYSK TSMRMAKTAF PGLGSPITHV DVSYDGKWIL GTTDTYLVLI
501: CTLFTDKNGL TKTGFSGRMG NKIPAPRLLK LTPLDSHLAG KDNKFHGGHF SWVTESGKQE RHIVATVGKF SVIWDLERVK NSAHECYRNQ QGLKSCYCYK
601: ILLKDESIVE SRFMHDNFSF SGNKSPEAPL VVATPLKVSS ISLSGKRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)