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AT3G19190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.615
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : autophagy 2
Curator
Summary (TAIR10)
Encodes autophagy-related 2 (ATG2).
Computational
Description (TAIR10)
AUTOPHAGY 2 (ATG2); CONTAINS InterPro DOMAIN/s: autophagy-related, C-terminal (InterPro:IPR015412); Has 828 Blast hits to 713 proteins in 221 species: Archae - 0; Bacteria - 44; Metazoa - 384; Fungi - 228; Plants - 88; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRAReggNOG:KOG2993EMBL:AP000419EMBL:CP002686EMBL:HQ446214EnsemblPlants:AT3G19190EnsemblPlants:AT3G19190.1
entrez:821453GeneID:821453GO:GO:0006914GO:GO:0006952GO:GO:0015031Gramene:AT3G19190.1hmmpanther:PTHR13190
hmmpanther:PTHR13190:SF1InterPro:IPR015412InterPro:IPR026849InterPro:IPR026854InterPro:IPR026885KEGG:ath:AT3G19190KO:K17906
PANTHER:PTHR13190PaxDb:F8S296Pfam:PF09333Pfam:PF12624Pfam:PF13329Proteomes:UP000006548RefSeq:NP_188550.3
STRING:3702.AT3G19190.1TAIR:AT3G19190tair10-symbols:ATATG2tair10-symbols:ATG2UniGene:At.38439UniProt:F4JB41
Coordinates (TAIR10) chr3:+:6639879..6648274
Molecular Weight (calculated) 203031.00 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.28
Length 1839 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVFPWNIAKS AEEAFSRWAV KRVVKFLLKK KLGKLILGDI DLDQLDIQLR DGTIQLSDLA INVDYLNDKF DAPLVIKEGS IGSLLVKMPW KTNGCQVEVD
0101: ELELVLAPRL ESNKSSSNEA STSASTREDL HNIRLEIGKH ENEMLMNAAK SASIDVHEGV KTVAKIVKWF LTSFHVKIKN LIIAFDPDFG KKQSEAGPRP
0201: TLVLRMTEIE CGISEEQVSA NEVSPDNFLG INRLANCVKF QGAVVELLNM DDDDDGDKTC DKKTSNDVTL IMTGVGGGFS GSLNFSIPWK NGSLDIRKVD
0301: ADISIDPVEV RFQPSTIRWF LQLWKTFTSF GSDCFPSVSH SDFLTDSPTI PTNVMVTPPA TLSLSGGQEL EHDTTPNLQF IPDWFPSSFS KKEEDGEVDI
0401: GASVDQFFEC FDAMRSYQSA SGSQGMWNWT SSVFTAINAA SSLASGSLLL PSEQQHVETS CKVSFAGVSV VLFFQDEVNW KGVSTRIHYL GAELRDISVS
0501: FQVCLHDLRL EGEVNSMEIA DYCQGGNVVD TANAESQTCL IKDLQAKVQT SLPPFASSDM HSDSERLSEI VSDGFLFRNK GFAVKTLLVI AAGGSGFQFT
0601: VNFQSSKASH RGSNSFSLSL PPTTFWLNLH SVEMLVNLFN DVSESIPITS HERNQVASSS KSESLRGSVS ICNARVILWF PFESISERFC NSLGQQFIVV
0701: DLSSSPPSDK ERAKERSPGE MHFPSATRSI CFSVGDASIY LVTSDLKDSE TNSYHRQVEF SAYNILHTNN KTRHQLSTIG MFWQDRPTVS PWLVERAKML
0801: ATQEESIQTD KSGGRGLEFA AVATPKDQDD IYSRSRKEII LASSFCLYVH LLPLAIHLDS WQYSKLCNLI EEAKNWLSRM AANTAEQTEE SVVCQTSLVV
0901: DCDSIDILVR PEPRMGIKKQ LQTELPGSWI QFNLRVQKLN LMSVPNLGSV SGADFFWLAH GEGTLLGSVT GLPDQELLLL SCNNSAIKRG NGGGSNALSS
1001: RFAGLDFLHL QEPGICNDYL AVSARGCTIS AVGGRLDWIE VATSFFSFED EKKTQEINSS SSSGSSFILN FVDVGLSYEP HHENTDHLRQ ASDPWVACLV
1101: AASSFSLSKK SLVDSIRNDY RIRIQDLGLL LSVDFDLSKL GGTYSSEHLH ESGYVKVAND SLIEAILRTN SENGLLWELE CSKSHLVIET CSDTTSGLIR
1201: LATQLQQLLA PDLEESAVHL QTRWDSIQQA NARNDLDISD RLSSSDSSGE MKYLRLESEN ETGVIGLMDE INEDAFQFDV NPTYQSDSVE CQNNYMSPHG
1301: ISHGQAYNWV PATEKLPSNQ SICGSSSRIN SESSQVFLER ESLPEIFENY CLSEFRPSSE VPQEGDSSGR ELFPETDLRR GNSGWYDDAS LRIVEDHVSE
1401: ATEEDHEEHI LDGECSSFGQ TSYSAVAANG RILLKNIDLK WRIYSGSDWH DSRKKGENFK HTKGRDTTSC LELELSGVLG YYNSKDHPRD SSSYAFKLEL
1501: KAVRPDPETP LEENRFFGAN SLEKPVVSMG DSGGSTMSVS VQGHNIIEEA LLPYFQKFDI WPVNVRVDYS PHHVDIAALT GGKYAELVNL VPWKGIELQL
1601: KHVHAAGIYG WGNVCETILG EWLEDVSQNQ IHQLLKGIPT VRSLSALYAA ALKLVSSPVE SYRKDRRLVK GVQRGTVAFL RSISLEAVGL GVHLAAGAHD
1701: ILLRAEYIFA SSPSLPQPQG RTKTNVRHNQ PRNAKQGMLK ACESIGDGIG KTASALVRTP LKKYQRGDGA GSAFATVVQG VPTAAIAPAS ACARAVHSAL
1801: VGIRNRSIIS PFSLDPEHKK ESMEKYLGPD KQRKQDQHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)