AT3G19190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : autophagy 2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes autophagy-related 2 (ATG2). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AUTOPHAGY 2 (ATG2); CONTAINS InterPro DOMAIN/s: autophagy-related, C-terminal (InterPro:IPR015412); Has 828 Blast hits to 713 proteins in 221 species: Archae - 0; Bacteria - 44; Metazoa - 384; Fungi - 228; Plants - 88; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6639879..6648274 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 203031.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 1839 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVFPWNIAKS AEEAFSRWAV KRVVKFLLKK KLGKLILGDI DLDQLDIQLR DGTIQLSDLA INVDYLNDKF DAPLVIKEGS IGSLLVKMPW KTNGCQVEVD 0101: ELELVLAPRL ESNKSSSNEA STSASTREDL HNIRLEIGKH ENEMLMNAAK SASIDVHEGV KTVAKIVKWF LTSFHVKIKN LIIAFDPDFG KKQSEAGPRP 0201: TLVLRMTEIE CGISEEQVSA NEVSPDNFLG INRLANCVKF QGAVVELLNM DDDDDGDKTC DKKTSNDVTL IMTGVGGGFS GSLNFSIPWK NGSLDIRKVD 0301: ADISIDPVEV RFQPSTIRWF LQLWKTFTSF GSDCFPSVSH SDFLTDSPTI PTNVMVTPPA TLSLSGGQEL EHDTTPNLQF IPDWFPSSFS KKEEDGEVDI 0401: GASVDQFFEC FDAMRSYQSA SGSQGMWNWT SSVFTAINAA SSLASGSLLL PSEQQHVETS CKVSFAGVSV VLFFQDEVNW KGVSTRIHYL GAELRDISVS 0501: FQVCLHDLRL EGEVNSMEIA DYCQGGNVVD TANAESQTCL IKDLQAKVQT SLPPFASSDM HSDSERLSEI VSDGFLFRNK GFAVKTLLVI AAGGSGFQFT 0601: VNFQSSKASH RGSNSFSLSL PPTTFWLNLH SVEMLVNLFN DVSESIPITS HERNQVASSS KSESLRGSVS ICNARVILWF PFESISERFC NSLGQQFIVV 0701: DLSSSPPSDK ERAKERSPGE MHFPSATRSI CFSVGDASIY LVTSDLKDSE TNSYHRQVEF SAYNILHTNN KTRHQLSTIG MFWQDRPTVS PWLVERAKML 0801: ATQEESIQTD KSGGRGLEFA AVATPKDQDD IYSRSRKEII LASSFCLYVH LLPLAIHLDS WQYSKLCNLI EEAKNWLSRM AANTAEQTEE SVVCQTSLVV 0901: DCDSIDILVR PEPRMGIKKQ LQTELPGSWI QFNLRVQKLN LMSVPNLGSV SGADFFWLAH GEGTLLGSVT GLPDQELLLL SCNNSAIKRG NGGGSNALSS 1001: RFAGLDFLHL QEPGICNDYL AVSARGCTIS AVGGRLDWIE VATSFFSFED EKKTQEINSS SSSGSSFILN FVDVGLSYEP HHENTDHLRQ ASDPWVACLV 1101: AASSFSLSKK SLVDSIRNDY RIRIQDLGLL LSVDFDLSKL GGTYSSEHLH ESGYVKVAND SLIEAILRTN SENGLLWELE CSKSHLVIET CSDTTSGLIR 1201: LATQLQQLLA PDLEESAVHL QTRWDSIQQA NARNDLDISD RLSSSDSSGE MKYLRLESEN ETGVIGLMDE INEDAFQFDV NPTYQSDSVE CQNNYMSPHG 1301: ISHGQAYNWV PATEKLPSNQ SICGSSSRIN SESSQVFLER ESLPEIFENY CLSEFRPSSE VPQEGDSSGR ELFPETDLRR GNSGWYDDAS LRIVEDHVSE 1401: ATEEDHEEHI LDGECSSFGQ TSYSAVAANG RILLKNIDLK WRIYSGSDWH DSRKKGENFK HTKGRDTTSC LELELSGVLG YYNSKDHPRD SSSYAFKLEL 1501: KAVRPDPETP LEENRFFGAN SLEKPVVSMG DSGGSTMSVS VQGHNIIEEA LLPYFQKFDI WPVNVRVDYS PHHVDIAALT GGKYAELVNL VPWKGIELQL 1601: KHVHAAGIYG WGNVCETILG EWLEDVSQNQ IHQLLKGIPT VRSLSALYAA ALKLVSSPVE SYRKDRRLVK GVQRGTVAFL RSISLEAVGL GVHLAAGAHD 1701: ILLRAEYIFA SSPSLPQPQG RTKTNVRHNQ PRNAKQGMLK ACESIGDGIG KTASALVRTP LKKYQRGDGA GSAFATVVQG VPTAAIAPAS ACARAVHSAL 1801: VGIRNRSIIS PFSLDPEHKK ESMEKYLGPD KQRKQDQHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)