AT3G19184.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : AP2/B3-like transcriptional factor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G42700.1); Has 304 Blast hits to 291 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:6637555..6639035 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31648.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.23 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 277 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS SSSSSKPSPA KPRTMRIPVD FSEVRRSSRA KGPPPSYKEF GLEPLERRPR RSSRRRDLLN 101: RVYASDDARM YAFDRAEKLQ SSLDSEYASF TKPMLQSHVT GGFWLGLPLP FCKAHMPKRD VIMTLVDEEE EESQAKYLAQ KNGLSGGWRG FAIDHQLVDG 201: DAVVFHLIAR TTFKVYIIRV NDDANNDSDG NEVNDDDSDG NEEDRDNDNE SNEKQKETVS EGRQLRSSGK RKRRGRK |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)