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AT3G19120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PIF / Ping-Pong family of plant transposases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PIF / Ping-Pong family of plant transposases; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 644 Blast hits to 642 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 49; Plants - 189; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411206YeggNOG:KOG4585EMBL:AP000419EMBL:AY070731EMBL:AY149933EMBL:CP002686EnsemblPlants:AT3G19120
EnsemblPlants:AT3G19120.1entrez:821446GeneID:821446Gramene:AT3G19120.1hmmpanther:PTHR22930hmmpanther:PTHR22930:SF58HOGENOM:HOG000090855
IntAct:Q9LJL8InterPro:IPR027806KEGG:ath:AT3G19120OMA:INVRGHHPfam:PF13359PhylomeDB:Q9LJL8Proteomes:UP000006548
RefSeq:NP_566626.1STRING:3702.AT3G19120.1TAIR:AT3G19120UniGene:At.28342UniProt:Q9LJL8
Coordinates (TAIR10) chr3:-:6609678..6611018
Molecular Weight (calculated) 49420.40 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.08
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAFMAMLS HLLHLQNSLD PTSTLFSSAS TSSQSSTTPS SLLSTSSAAP LLFFTLASLL SFLAVNRSST ESSSSSESPS PSPPPPLADG DYSVAAFRAL
101: TTDHIWSLDA PLRDARWRSL YGLSYPVFIT VVDKLKPFIT ASNLSLPADY AVAMVLSRLA HGCSAKTLAS RYSLDPYLIS KITNMVTRLL ATKLYPEFIK
201: IPVGKRRLIE TTQGFEELTS LPNICGAIDS TPVKLRRRTK LNPRNIYGCK YGYDAVLLQV VADHKKIFWD VCVKAPGGED DSSHFRDSLL YKRLTSGDIV
301: WEKVINIRGH HVRPYIVGDW CYPLLSFLMT PFSPNGSGTP PENLFDGMLM KGRSVVVEAI GLLKARWKIL QSLNVGVNHA PQTIVACCVL HNLCQIAREP
401: EPEIWKDPDE AGTPARVLES ERQFYYYGES LRQALAEDLH QRLSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)