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AT3G19080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWIB complex BAF60b domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1); Has 4780 Blast hits to 2475 proteins in 346 species: Archae - 0; Bacteria - 702; Metazoa - 1207; Fungi - 636; Plants - 993; Viruses - 61; Other Eukaryotes - 1181 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:CP002686EnsemblPlants:AT3G19080EnsemblPlants:AT3G19080.1entrez:821442Gene3D:1.10.10.60
Gene3D:1.10.245.10GeneID:821442GO:GO:0003677GO:GO:0009506Gramene:AT3G19080.1hmmpanther:PTHR13844hmmpanther:PTHR13844:SF4
InParanoid:F4J9Z9InterPro:IPR003121InterPro:IPR009057InterPro:IPR014876InterPro:IPR019835iPTMnet:F4J9Z9KEGG:ath:AT3G19080
KO:K15223ncoils:CoilOMA:HIWPLEDPaxDb:F4J9Z9Pfam:PF02201Pfam:PF08766PRIDE:F4J9Z9
ProteinModelPortal:F4J9Z9Proteomes:UP000006548RefSeq:NP_188538.1SMART:SM00151SMR:F4J9Z9STRING:3702.AT3G19080.1SUPFAM:0042580
SUPFAM:SSF47592TAIR:AT3G19080UniGene:At.53383UniProt:F4J9Z9
Coordinates (TAIR10) chr3:+:6596082..6598667
Molecular Weight (calculated) 52248.30 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.91
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)