AT3G19020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G49490.1); Has 706755 Blast hits to 161426 proteins in 4337 species: Archae - 1652; Bacteria - 156223; Metazoa - 226544; Fungi - 92124; Plants - 115331; Viruses - 14004; Other Eukaryotes - 100877 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6559174..6562044 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102827.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||||||
| Length | 956 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRRTMEKPF GCFLLLFCFT ISIFFYSAAA LTDEEASFLT RRQLLALSEN GDLPDDIEYE VDLDLKFANN RLKRAYIALQ AWKKAFYSDP FNTAANWVGP 101: DVCSYKGVFC APALDDPSVL VVAGIDLNHA DIAGYLPPEL GLLTDVALFH VNSNRFCGVI PKSLSKLTLM YEFDVSNNRF VGPFPTVALS WPSLKFLDIR 201: YNDFEGKLPP EIFDKDLDAI FLNNNRFEST IPETIGKSTA SVVTFAHNKF SGCIPKTIGQ MKNLNEIVFI GNNLSGCLPN EIGSLNNVTV FDASSNGFVG 301: SLPSTLSGLA NVEQMDFSYN KFTGFVTDNI CKLPKLSNFT FSYNFFNGEA QSCVPGSSQE KQFDDTSNCL QNRPNQKSAK ECLPVVSRPV DCSKDKCAGG 401: GGGGSNPSPK PTPTPKAPEP KKEINPPNLE EPSKPKPEES PKPQQPSPKP ETPSHEPSNP KEPKPESPKQ ESPKTEQPKP KPESPKQESP KQEAPKPEQP 501: KPKPESPKQE SSKQEPPKPE ESPKPEPPKP EESPKPQPPK QETPKPEESP KPQPPKQETP KPEESPKPQP PKQETPKPEE SPKPQPPKQE QPPKTEAPKM 601: GSPPLESPVP NDPYDASPIK KRRPQPPSPS TEETKTTSPQ SPPVHSPPPP PPVHSPPPPV FSPPPPMHSP PPPVYSPPPP VHSPPPPPVH SPPPPVHSPP 701: PPVHSPPPPV HSPPPPVHSP PPPVHSPPPP VQSPPPPPVF SPPPPAPIYS PPPPPVHSPP PPVHSPPPPP VHSPPPPVHS PPPPVHSPPP PVHSPPPPVH 801: SPPPPSPIYS PPPPVFSPPP KPVTPLPPAT SPMANAPTPS SSESGEISTP VQAPTPDSED IEAPSDSNHS PVFKSSPAPS PDSEPEVEAP VPSSEPEVEA 901: PKQSEATPSS SPPSSNPSPD VTAPPSEDND DGDNFILPPN IGHQYASPPP PMFPGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)