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AT3G18990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16549797 (2006): nucleus nuclear matrix chromatin
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3
Computational
Description (TAIR10)
REDUCED VERNALIZATION RESPONSE 1 (VRN1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: related to vernalization1 1 (TAIR:AT1G49480.1); Has 683 Blast hits to 597 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6765DNASU:821432eggNOG:ENOG410J0VWeggNOG:ENOG410YZ3EEMBL:AB493620EMBL:AF289051EMBL:AF289052
EMBL:AK230388EMBL:AP000735EMBL:BT024731EMBL:CP002686EnsemblPlants:AT3G18990EnsemblPlants:AT3G18990.1entrez:821432
Gene3D:2.40.330.10GeneID:821432Genevisible:Q8L3W1GO:GO:0003677GO:GO:0005654GO:GO:0006351GO:GO:0006355
GO:GO:0009909GO:GO:0010048Gramene:AT3G18990.1hmmpanther:PTHR31920hmmpanther:PTHR31920:SF18HOGENOM:HOG000005864InParanoid:Q8L3W1
IntAct:Q8L3W1InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT3G18990OMA:YIFNLSHPaxDb:Q8L3W1PDB:4I1K
PDBsum:4I1KPfam:PF02362Pfam:Q8L3W1Pfscan:PS50863PhylomeDB:Q8L3W1PRIDE:Q8L3W1PRO:PR:Q8L3W1
PROSITE:PS50863ProteinModelPortal:Q8L3W1Proteomes:UP000006548RefSeq:NP_188529.2SMART:SM01019SMR:Q8L3W1STRING:3702.AT3G18990.1
SUPFAM:SSF101936TAIR:AT3G18990tair10-symbols:REM39tair10-symbols:VRN1UniGene:At.24480UniGene:At.27524UniProt:Q8L3W1
Coordinates (TAIR10) chr3:-:6549077..6551568
Molecular Weight (calculated) 39276.70 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.49
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)