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AT3G18970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mitochondrial editing factor 20
Curator
Summary (TAIR10)
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
Computational
Description (TAIR10)
mitochondrial editing factor 20 (MEF20); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G59200.1); Has 30354 Blast hits to 12990 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 30011; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP000735EMBL:BT030396EMBL:CP002686EnsemblPlants:AT3G18970EnsemblPlants:AT3G18970.1
entrez:821430GeneID:821430Genevisible:Q9LJ69GO:GO:0005739GO:GO:0080156Gramene:AT3G18970.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF873HOGENOM:HOG000237569InParanoid:Q9LJ69InterPro:IPR002885KEGG:ath:AT3G18970OMA:MPERTSVPaxDb:Q9LJ69
Pfam:PF01535Pfam:PF13041Pfam:Q9LJ69Pfscan:PS51375PhylomeDB:Q9LJ69PRIDE:Q9LJ69PRO:PR:Q9LJ69
PROSITE:PS51375ProteinModelPortal:Q9LJ69Proteomes:UP000006548RefSeq:NP_188527.2SMR:Q9LJ69STRING:3702.AT3G18970.1TAIR:AT3G18970
tair10-symbols:MEF20TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.34404UniGene:At.49634UniGene:At.66475UniProt:Q9LJ69
Coordinates (TAIR10) chr3:-:6543699..6545117
Molecular Weight (calculated) 52561.10 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.02
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVFPGPRF LSLLQQNSKT LIQAKQIHAQ LVINGCHDNS LFGKLIGHYC SKPSTESSSK LAHLLVFPRF GHPDKFLFNT LLKCSKPEDS IRIFANYASK
101: SSLLYLNERT FVFVLGACAR SASSSALRVG RIVHGMVKKL GFLYESELIG TTLLHFYAKN GDLRYARKVF DEMPERTSVT WNAMIGGYCS HKDKGNHNAR
201: KAMVLFRRFS CCGSGVRPTD TTMVCVLSAI SQTGLLEIGS LVHGYIEKLG FTPEVDVFIG TALVDMYSKC GCLNNAFSVF ELMKVKNVFT WTSMATGLAL
301: NGRGNETPNL LNRMAESGIK PNEITFTSLL SAYRHIGLVE EGIELFKSMK TRFGVTPVIE HYGCIVDLLG KAGRIQEAYQ FILAMPIKPD AILLRSLCNA
401: CSIYGETVMG EEIGKALLEI EREDEKLSGS ECEDYVALSN VLAHKGKWVE VEKLRKEMKE RRIKTRPGYS FV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)