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AT3G18870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 839 Blast hits to 671 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AP002039EMBL:BT029467
EMBL:CP002686EnsemblPlants:AT3G18870EnsemblPlants:AT3G18870.1entrez:821420
GeneID:821420GO:GO:0003690GO:GO:0005739GO:GO:0006355
GO:GO:0009507Gramene:AT3G18870.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF19
HOGENOM:HOG000239190InterPro:IPR003690KEGG:ath:AT3G18870KO:K15032
OMA:HRENLRYPfam:PF02536PhylomeDB:Q9LHN2Proteomes:UP000006548
RefSeq:NP_188517.1SMART:SM00733SMR:Q9LHN2STRING:3702.AT3G18870.1
TAIR:AT3G18870UniGene:At.21618UniGene:At.71275UniProt:Q9LHN2
Coordinates (TAIR10) chr3:-:6508515..6509339
Molecular Weight (calculated) 31433.30 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.25
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)