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AT3G18800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU3VeggNOG:ENOG410YIDWEMBL:AB026654EMBL:AY086724
EMBL:BT024770EMBL:CP002686EnsemblPlants:AT3G18800EnsemblPlants:AT3G18800.1
entrez:821413GeneID:821413GO:GO:0005886GO:GO:0016021
Gramene:AT3G18800.1hmmpanther:PTHR36363HOGENOM:HOG000241139KEGG:ath:AT3G18800
OMA:CLEIRTTPhylomeDB:Q9LS96Proteomes:UP000006548RefSeq:NP_566619.1
TAIR:AT3G18800TMHMM:TMhelixUniGene:At.38492UniGene:At.67956
UniProt:Q9LS96
Coordinates (TAIR10) chr3:+:6479746..6480339
Molecular Weight (calculated) 22871.90 Da
IEP (calculated) 9.00
GRAVY (calculated) 0.07
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MADYDDEIDQ NNQPFIPKET ALQALNSIIQ LHFEKTLEKK RAIDHQKKKL HKLFQLFFIF LAVIFFSLSQ PSGRLHCRHC WAPICLLSFS HLFFYVSVAQ
101: TLRCINGFKY QRRCHKLTLG LATHKLRFIK SRIAAGDFLG GGDGDEASAA AWDLEVPYQE PPDSYFGKFK RNWALYFGFL ILLYTFMISF SVVILCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)