suba logo
AT3G18790.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPPCeggNOG:KOG3068EMBL:AB026654EMBL:AK118557EMBL:AK318759EMBL:AY065003EMBL:AY090274
EMBL:CP002686EnsemblPlants:AT3G18790EnsemblPlants:AT3G18790.1entrez:821412GeneID:821412GO:GO:0005829GO:GO:0009507
Gramene:AT3G18790.1hmmpanther:PTHR13021HOGENOM:HOG000173970IntAct:Q9LS97InterPro:IPR009360KEGG:ath:AT3G18790KO:K12870
ncoils:CoilOMA:DYARVGPPANTHER:PTHR13021Pfam:PF06246PhylomeDB:Q9LS97Proteomes:UP000006548Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_188509.1SMR:Q9LS97STRING:3702.AT3G18790.1SUPFAM:0050817TAIR:AT3G18790
UniGene:At.28288UniProt:Q9LS97
Coordinates (TAIR10) chr3:+:6477853..6478755
Molecular Weight (calculated) 35379.00 Da
IEP (calculated) 6.82
GRAVY (calculated) -1.14
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)