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AT3G18670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.624
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 4772 Blast hits to 3121 proteins in 218 species: Archae - 7; Bacteria - 222; Metazoa - 2187; Fungi - 197; Plants - 1396; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:CP002686EnsemblPlants:AT3G18670EnsemblPlants:AT3G18670.1entrez:821398Gene3D:1.25.40.20
GeneID:821398GO:GO:0016021Gramene:AT3G18670.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF39InParanoid:F4J8U1InterPro:IPR002110
InterPro:IPR020683InterPro:IPR026961KEGG:ath:AT3G18670OMA:HIKIVEEPaxDb:F4J8U1Pfam:PF12796Pfam:PF13962
Pfscan:PS50088Pfscan:PS50297PRIDE:F4J8U1PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:F4J8U1Proteomes:UP000006548
RefSeq:NP_188497.1SMART:SM00248SMR:F4J8U1STRING:3702.AT3G18670.1SUPFAM:SSF48403TAIR:AT3G18670TMHMM:TMhelix
UniGene:At.53376UniProt:F4J8U1
Coordinates (TAIR10) chr3:-:6424135..6426471
Molecular Weight (calculated) 67905.00 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.06
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTEKGYPRG FRAESLRPET GPRSFRFDSM QIDEAADLQK DEIRQENSTY LVLFKNIDSG ELEATKDFLD RNPEALTAIL TSNGDTPIHK AVLSGHIKIV
101: EEIIRRIHDP EQVLKIKNDN GYTALTYAAT GGIVRIAECL VNKCPGLVSV RNAKEHIPIV VASLYGHKHL VQYLYSHTPL SDLDPCDDSD EHKGKNGAML
201: VTNCIVDGLY CIALDLIQRY PKLAYTRDSD NDTAIMALAQ TPYAFPSVPR IIRRVYKLKL GHAQAKEILD CICQEIPKFD AAQQKNAGLN QALFKAVENG
301: IVEYIEEMMR HYPDIVWSKN SSGLNIFFYA VSQRQEKIFS LIYNIGAKKN ILATNWDIFH NNMLHHAAYR APASRLNLIP GAALQMQREL QWFKEVEKLV
401: QPKHRKMVNL KQKKTPKALF TDQHKDLVEQ GEKWMKETAT SCTVVAALIT TMMFSSAFTV PGGYRSDGMP LYIHQHRFKI FLISDAISLF TSCMSLLMFL
501: GILKSRYREE DFLRSLPTKL IVGLLALFLS MATMIVTFVV TLMTLVGEKI SWVSAQFMFL AVIPLGMFVV LQFPVLLEIF RATYCPNVFD KPRRVFKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)