suba logo
AT3G18650.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 103
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 103 (AGL103); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 3468 Blast hits to 3245 proteins in 494 species: Archae - 0; Bacteria - 4; Metazoa - 97; Fungi - 111; Plants - 2568; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB026654EMBL:BT029549EMBL:CP002686EnsemblPlants:AT3G18650EnsemblPlants:AT3G18650.1
entrez:821396GeneID:821396GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G18650.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF240HOGENOM:HOG000209997IntAct:Q9LSB2InterPro:IPR002100KEGG:ath:AT3G18650ncoils:Coil
OMA:TRIQHRTPaxDb:Q9LSB2Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9LSB2PRINTS:PR00404PROSITE:PS50066
ProteinModelPortal:Q9LSB2Proteomes:UP000006548RefSeq:NP_188495.1SMART:SM00432STRING:3702.AT3G18650.1SUPFAM:SSF55455TAIR:AT3G18650
tair10-symbols:AGL103UniGene:At.65106UniGene:At.68949UniProt:Q9LSB2
Coordinates (TAIR10) chr3:-:6417344..6418504
Molecular Weight (calculated) 43554.10 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.78
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)