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AT3G18610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleolin like 2
Curator
Summary (TAIR10)
Encodes ATNUC-L2 (NUCLEOLIN LIKE 2).
Computational
Description (TAIR10)
nucleolin like 2 (NUC-L2); FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: egg cell, cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleolin like 1 (TAIR:AT1G48920.1); Has 220619 Blast hits to 110675 proteins in 3421 species: Archae - 647; Bacteria - 30556; Metazoa - 92066; Fungi - 36057; Plants - 14337; Viruses - 1241; Other Eukaryotes - 45715 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG4210EMBL:AP001303EMBL:CP002686EMBL:DQ446672EnsemblPlants:AT3G18610EnsemblPlants:AT3G18610.1
entrez:821392Gene3D:3.30.70.330GeneID:821392Genevisible:Q1PEP5GO:GO:0000166GO:GO:0003723GO:GO:0005730
GO:GO:0006364GO:GO:0031491Gramene:AT3G18610.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF497HOGENOM:HOG000124794InParanoid:Q1PEP5
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q1PEP5KEGG:ath:AT3G18610KO:K11294ncoils:CoilOMA:SNPGRKG
PaxDb:Q1PEP5Pfam:PF00076Pfam:Q1PEP5Pfscan:PS50102PRIDE:Q1PEP5PRO:PR:Q1PEP5PROSITE:PS50102
ProteinModelPortal:Q1PEP5Proteomes:UP000006548RefSeq:NP_188491.1SMART:SM00360SMR:Q1PEP5STRING:3702.AT3G18610.1SUPFAM:SSF54928
TAIR:AT3G18610tair10-symbols:ATNUC-L2tair10-symbols:NUC-L2tair10-symbols:PARLL1UniGene:At.53375UniProt:Q1PEP5
Coordinates (TAIR10) chr3:-:6404270..6407822
Molecular Weight (calculated) 68990.00 Da
IEP (calculated) 4.75
GRAVY (calculated) -1.28
Length 636 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)