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AT3G18600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 44310 Blast hits to 43105 proteins in 3082 species: Archae - 753; Bacteria - 22440; Metazoa - 6214; Fungi - 4682; Plants - 2500; Viruses - 12; Other Eukaryotes - 7709 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-295-MONOMERDNASU:821391EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0342EMBL:AP001303EMBL:AY070052
EMBL:AY096431EMBL:CP002686EnsemblPlants:AT3G18600EnsemblPlants:AT3G18600.1entrez:821391Gene3D:3.40.50.300GeneID:821391
Genevisible:Q9LIH9GO:GO:0003723GO:GO:0004386GO:GO:0005524GO:GO:0005730Gramene:AT3G18600.1hmmpanther:PTHR24031
hmmpanther:PTHR24031:SF301HOGENOM:HOG000268799InParanoid:Q9LIH9InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR025313InterPro:IPR027417iPTMnet:Q9LIH9KEGG:ath:AT3G18600KO:K13179ncoils:Coil
OMA:TKGFVFRPaxDb:Q9LIH9Pfam:PF00270Pfam:PF00271Pfam:PF13959Pfam:Q9LIH9Pfscan:PS51192
Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9LIH9PRIDE:Q9LIH9PRO:PR:Q9LIH9PROSITE:PS00039PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9LIH9Proteomes:UP000006548RefSeq:NP_188490.1scanprosite:PS00039SMART:SM00487
SMART:SM00490SMART:SM01178SMR:Q9LIH9STRING:3702.AT3G18600.1SUPFAM:SSF52540TAIR:AT3G18600UniGene:At.28418
UniProt:Q9LIH9
Coordinates (TAIR10) chr3:-:6399724..6403007
Molecular Weight (calculated) 63820.10 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.48
Length 568 amino acids
Sequence (TAIR10)
(BLAST)
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)