AT3G18500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.724 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1180 Blast hits to 1142 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 213; Plants - 283; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6352544..6355297 | ||||||||
| Molecular Weight (calculated) | 47762.30 Da | ||||||||
| IEP (calculated) | 8.36 | ||||||||
| GRAVY (calculated) | -0.46 | ||||||||
| Length | 426 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT 101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QRRTGDNVDG CAMFWKADRF GVLERENIEF SQFGMRDNVA 201: QLAVLELRKS NKSRKILLGN IHVLYNPNQG DVKLGQVRSL CSKAHLLSKK WGDIPIVLCG DFNSTPKSPL YNFLASSELN VMEHDKKELS GQKNCRPTKV 301: LETGSKSSNT ITFSFCSSWT KEEIRVATGQ ENSYWAAHPL KLNSSYASVK GSANTRDSVG EPLATSYHSK FLGTVDYLWY SDGLLPARVL DTLPIDVLCK 401: TKGLPCQELG SDHLALVSEF VFEPDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)