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AT3G18490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G25510.1); Has 4095 Blast hits to 4076 proteins in 356 species: Archae - 0; Bacteria - 4; Metazoa - 1079; Fungi - 788; Plants - 1999; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G18490-MONOMERBioGrid:6712EC:3.4.23.-eggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AB026658EMBL:AY080874
EMBL:AY150497EMBL:CP002686EnsemblPlants:AT3G18490EnsemblPlants:AT3G18490.1entrez:821379Gene3D:2.40.70.10GeneID:821379
Genevisible:Q9LS40GO:GO:0003677GO:GO:0004190GO:GO:0005783GO:GO:0009414GO:GO:0009627GO:GO:0009737
GO:GO:0030163GO:GO:0070001Gramene:AT3G18490.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF377HOGENOM:HOG000237482InParanoid:Q9LS40
IntAct:Q9LS40InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
InterPro:IPR033148iPTMnet:Q9LS40KEGG:ath:AT3G18490MEROPS:A01.A09OMA:VASQHKDPANTHER:PTHR13683PANTHER:PTHR13683:SF377
PaxDb:Q9LS40Pfam:PF14541Pfam:PF14543Pfam:Q9LS40Pfscan:PS51767PhylomeDB:Q9LS40PRIDE:Q9LS40
PRO:PR:Q9LS40PROSITE:PS00141PROSITE:PS51767ProteinModelPortal:Q9LS40Proteomes:UP000006548RefSeq:NP_188478.1scanprosite:PS00141
SMR:Q9LS40STRING:3702.AT3G18490.1SUPFAM:SSF50630SwissPalm:Q9LS40TAIR:AT3G18490UniGene:At.22647UniGene:At.71546
UniProt:Q9LS40
Coordinates (TAIR10) chr3:-:6349090..6350592
Molecular Weight (calculated) 53236.60 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.05
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFPRFLSLL AVVTLSLFLT TTDASSRSLS TPPKTNVLDV VSSLQQTQTI LSLDPTRSSL TTTKPESLSD PVFFNSSSPL SLELHSRDTF VASQHKDYKS
101: LTLSRLERDS SRVAGIVAKI RFAVEGVDRS DLKPVYNEDT RYQTEDLTTP VVSGASQGSG EYFSRIGVGT PAKEMYLVLD TGSDVNWIQC EPCADCYQQS
201: DPVFNPTSSS TYKSLTCSAP QCSLLETSAC RSNKCLYQVS YGDGSFTVGE LATDTVTFGN SGKINNVALG CGHDNEGLFT GAAGLLGLGG GVLSITNQMK
301: ATSFSYCLVD RDSGKSSSLD FNSVQLGGGD ATAPLLRNKK IDTFYYVGLS GFSVGGEKVV LPDAIFDVDA SGSGGVILDC GTAVTRLQTQ AYNSLRDAFL
401: KLTVNLKKGS SSISLFDTCY DFSSLSTVKV PTVAFHFTGG KSLDLPAKNY LIPVDDSGTF CFAFAPTSSS LSIIGNVQQQ GTRITYDLSK NVIGLSGNKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)