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AT3G18450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.737
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT3G18460.1); Has 593 Blast hits to 592 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 27; Plants - 497; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:6707eggNOG:ENOG410JP19eggNOG:ENOG410ZNBXEMBL:AB026658
EMBL:BT010855EMBL:BT011321EMBL:CP002686EnsemblPlants:AT3G18450
EnsemblPlants:AT3G18450.1entrez:821374GeneID:821374Genevisible:Q9LS45
GO:GO:0016021Gramene:AT3G18450.1hmmpanther:PTHR15907hmmpanther:PTHR15907:SF49
HOGENOM:HOG000237749InParanoid:Q9LS45InterPro:IPR006461KEGG:ath:AT3G18450
OMA:WITHLVCPaxDb:Q9LS45Pfam:PF04749Pfam:Q9LS45
PhylomeDB:Q9LS45PRO:PR:Q9LS45Proteomes:UP000006548RefSeq:NP_188474.1
STRING:3702.AT3G18450.1TAIR:AT3G18450TIGRfam:TIGR01571TIGRFAMs:TIGR01571
TMHMM:TMhelixUniGene:At.5476UniProt:Q9LS45
Coordinates (TAIR10) chr3:-:6331229..6332118
Molecular Weight (calculated) 20104.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.23
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPVGQTNQ AQPSVQHTAS PSNKVSHNGG IGKPANIPTG IPVNYQQTQN QWSSQLFDCM NDSENAVITL IAPCVTFGQI AEIVDEGATP CATAGLLYGA
101: LFFTGASFVY SYMFRARIRK KFGLPDAPAP DWITHLVCMP FALCQEYREL KHHGFDPILG WAGNVQQAQQ QEMMTPPTGQ RMMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)