AT3G18430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.524 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-binding EF-hand family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin 9 (TAIR:AT3G51920.1); Has 4647 Blast hits to 4647 proteins in 476 species: Archae - 0; Bacteria - 13; Metazoa - 2571; Fungi - 385; Plants - 959; Viruses - 0; Other Eukaryotes - 719 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6326180..6327476 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20032.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.33 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 175 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNTSSMLTQ YDIEEVQSHC HDLFEQQEIL SLYQRFCQLD RNAKGFISAD EFLSVPEFAM NPLSQRLLKM VDGLNFKDFV AFLSAFSAKA SLRQKVQLIF 101: KVYDSDCNGK VSFKDIMEVL RDLSGSFMSD EQREQVLSQV LKESGYTSDS FLTLEDFIKI FGSSRPEMDV EIPVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)