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AT3G18420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein prenylyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Bacterial transcriptional activator domain (InterPro:IPR005158), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39470.1); Has 2891 Blast hits to 2326 proteins in 645 species: Archae - 346; Bacteria - 1680; Metazoa - 203; Fungi - 21; Plants - 126; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE9IeggNOG:ENOG4111FF7EMBL:AB026658EMBL:AY037258EMBL:AY077665EMBL:AY086309EMBL:CP002686
EnsemblPlants:AT3G18420EnsemblPlants:AT3G18420.1entrez:821371Gene3D:1.25.40.10GeneID:821371Genevisible:Q9LS48GO:GO:0009507
GO:GO:0009536GO:GO:0009658GO:GO:0009941Gramene:AT3G18420.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF70HOGENOM:HOG000153087
InParanoid:Q9LS48InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734iPTMnet:Q9LS48KEGG:ath:AT3G18420ncoils:Coil
OMA:SKMKLFGPaxDb:Q9LS48Pfam:PF07719Pfam:PF13174Pfam:PF14559Pfam:Q9LS48Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q9LS48PRIDE:Q9LS48PRO:PR:Q9LS48PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9LS48
Proteomes:UP000006548RefSeq:NP_566609.1SMART:SM00028SMR:Q9LS48STRING:3702.AT3G18420.1SUPFAM:SSF48452TAIR:AT3G18420
UniGene:At.5474UniGene:At.70204UniProt:Q9LS48
Coordinates (TAIR10) chr3:-:6324771..6325721
Molecular Weight (calculated) 35632.90 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.33
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)