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AT3G18380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6700eggNOG:ENOG410IK7JeggNOG:ENOG410Y94EEMBL:AB026658
EMBL:AY093042EMBL:BT003428EMBL:CP002686EnsemblPlants:AT3G18380
EnsemblPlants:AT3G18380.1entrez:821367Gene3D:1.10.10.60GeneID:821367
Genevisible:Q8RWJ7GO:GO:0003677GO:GO:0003682GO:GO:0005634
hmmpanther:PTHR33827hmmpanther:PTHR33827:SF3HOGENOM:HOG000241854IntAct:Q8RWJ7
InterPro:IPR001356InterPro:IPR009057InterPro:IPR032001KEGG:ath:AT3G18380
OMA:NTAMPGRPaxDb:Q8RWJ7Pfam:PF16719Pfam:Q8RWJ7
PhylomeDB:Q8RWJ7PRIDE:Q8RWJ7PRO:PR:Q8RWJ7ProteinModelPortal:Q8RWJ7
Proteomes:UP000006548RefSeq:NP_001189923.1RefSeq:NP_188467.2RefSeq:NP_974333.1
SMART:SM00389SMR:Q8RWJ7STRING:3702.AT3G18380.2SUPFAM:SSF46689
TAIR:AT3G18380UniGene:At.5471UniProt:Q8RWJ7
Coordinates (TAIR10) chr3:-:6311002..6313181
Molecular Weight (calculated) 38523.00 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.40
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPPSNGGP AFRFILPEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKVVVQF KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR
101: SVIQPLSVPK TTHMTGNLPG MTPAPSGSLV PGVMRSGSDN SYLEFEAKSA RDGAWYDVQA FLAHRNLEIG DPEVQVRFAG FEVEEDEWIN VKKHVRQRSL
201: PCEASECVAV LAGDLVLCFQ EGKDQALYFD AIVLDAQRRR HDVRGCRCRF LVRYSHDQSE EIVPLRKICR RPETDYRLQQ LHNAVNDLAN SNQHQIPALD
301: AAAKTPLSLP GATVPIVAPE SKDPSLSATP ATLVQPSSNA ATVPAGSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)