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AT3G18370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 5534 Blast hits to 4008 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 3360; Fungi - 437; Plants - 1305; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1012EMBL:AY056799EMBL:AY133527EMBL:CP002686EnsemblPlants:AT3G18370EnsemblPlants:AT3G18370.1
entrez:821366Gene3D:2.60.40.150GeneID:821366GO:GO:0005783Gramene:AT3G18370.1hmmpanther:PTHR10774hmmpanther:PTHR10774:SF1
HOGENOM:HOG000030828InterPro:IPR000008KEGG:ath:AT3G18370ncoils:CoilOMA:WAIGHNSPfam:PF00168Pfscan:PS50004
PhylomeDB:Q93ZM0PROSITE:PS50004Proteomes:UP000006548RefSeq:NP_566607.1SMART:SM00239SMR:Q93ZM0STRING:3702.AT3G18370.1
SUPFAM:SSF49562TAIR:AT3G18370tair10-symbols:ATSYTFtair10-symbols:NTMC2T3tair10-symbols:NTMC2TYPE3tair10-symbols:SYTFUniGene:At.22085
UniProt:Q93ZM0
Coordinates (TAIR10) chr3:+:6306362..6310256
Molecular Weight (calculated) 91137.60 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.23
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRIKRKGL INTEAAREFI NHLVAERHSL LLLVPLVLAF WAIERWVFAF SNWVPLVVAV WASLQYGSYQ RALLAEDLTK KWRQTVFNAS TITPLEHCQW
101: LNKLLSEIWL NYMNKKLSLR FSSMVEKRLR QRRSRLIENI QLLEFSLGSC PPLLGLHGTC WSKSGEQKIM RLDFNWDTTD LSILLQAKLS MPFNRTARIV
201: VNSLCIKGDI LIRPILEGRA LLYSFVSNPE VRIGVAFGGG GGQSLPATEL PGVSSWLVKI LTETLNKKMV EPRRGCFSLP ATDLHKTAIG GIIYVTVVSG
301: NNLNRRILRG SPSKSSEIGE GSSGNSSSKP VQTFVEVELE QLSRRTEMKS GPNPAYQSTF NMILHDNTGT LKFNLYENNP GSVRYDSLAS CEVKMKYVGD
401: DSTMFWAVGS DNGVIAKHAE FCGQEIEMVV PFEGVSSGEL TVRLLLKEWH FSDGSHSLNS VNSSSLHSLD SSSALLSKTG RKIIVTVLAG KNLVSKDKSG
501: KCDASVKLQY GKIIQKTKIV NAAECVWNQK FEFEELAGEE YLKVKCYREE MLGTDNIGTA TLSLQGINNS EMHIWVPLED VNSGEIELLI EALDPEYSEA
601: DSSKGLIELV LVEARDLVAA DIRGTSDPYV RVQYGEKKQR TKVIYKTLQP KWNQTMEFPD DGSSLELHVK DYNTLLPTSS IGNCVVEYQG LKPNETADKW
701: IILQGVKHGE VHVRVTRKVT EIQRRASAGP GTPFNKALLL SNQMKQVMIK FQNLIDDGDL EGLAEALEEL ESLEDEQEQY LLQLQTEQSL LINKIKDLGK
801: EILNSSPAQA PSRDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)