AT3G18270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (CYP77A5P); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mandelate racemase/muconate lactonizing enzyme, N-terminal (InterPro:IPR013341), Mandelate racemase/muconate lactonizing enzyme (InterPro:IPR001354), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342); BEST Arabidopsis thaliana protein match is: magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (TAIR:AT1G68890.1); Has 7895 Blast hits to 7895 proteins in 1549 species: Archae - 251; Bacteria - 5761; Metazoa - 71; Fungi - 140; Plants - 48; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6262010..6264025 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44664.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSILSSSSS SQLVNSTLNF QNSPKSPITV MSKTSKFKTL TENFTVRVLK AENRELNVAL LSPFTIASSR LDSVSNVAIR IELNDGFVGW GEAPILPSVT 101: AEDQIMAMVK AREASEFLRE LPEMKLGNVL QEIGRFLPGH QFASVRAGME MAMIDAAAKS VRVPLWKLFG GASSTITTDI TIPIVSPAEA SVLASKYRKR 201: GFETLKLKVG KNLKADIEVL QAIRAVHPTC SFILDANEGY QTEEAVKVLE TLHEMKVTPV LFEQPVHRDN WEGLSHVTRT AKNRFGVSIA ADESCRGLTD 301: LKKIIEGNIV DVVNIKLAKT GILESLEVIE LARSSGIELM IGGMVETRLA MGFSGHLAAG LGCFRFIDLD TPLLLADDPV QGGYKACGAV YEFKDEGGHG 401: GYLQWNDVAQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)