suba logo
AT3G18215.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.904
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, DUF599
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF599; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT5G24600.2); Has 303 Blast hits to 303 proteins in 73 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJX8eggNOG:ENOG410XX87EMBL:AB020749EMBL:AY056224
EMBL:AY091383EMBL:CP002686EnsemblPlants:AT3G18215EnsemblPlants:AT3G18215.1
entrez:821349GeneID:821349GO:GO:0016021Gramene:AT3G18215.1
hmmpanther:PTHR31168hmmpanther:PTHR31168:SF1HOGENOM:HOG000238997InterPro:IPR006747
KEGG:ath:AT3G18215OMA:IPMFVCCPfam:PF04654PhylomeDB:Q9LV18
Proteomes:UP000006548RefSeq:NP_566601.1TAIR:AT3G18215TMHMM:TMhelix
UniGene:At.6061UniProt:Q9LV18
Coordinates (TAIR10) chr3:+:6240968..6242358
Molecular Weight (calculated) 27641.90 Da
IEP (calculated) 8.85
GRAVY (calculated) 0.41
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MWTEESLDLV LVPTGLVVMV AYHVWLVYAI LHRPKLTVIA LNAESRRQWV FSMMTEPLKN GTLAVQTIRN NIMASTLLAT TAITLCSIIG VFVSNSSSSK
101: STATNLIYGS KSPRLASFKN FAILICFLMA FLCNIQSIRY YAHVSFLVTV PVSRGKREHC EYVSRNLNRA SYFWSLGLRA FYFSFPLFLW TFGPIPMFVC
201: CCMMSSILYF LDTTTSFTRH LHSQSFRETA DSMDGEIESA VHTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)