AT3G18200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.894 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Walls Are Thin 1 (TAIR:AT1G75500.2); Has 4958 Blast hits to 4938 proteins in 907 species: Archae - 35; Bacteria - 2613; Metazoa - 8; Fungi - 3; Plants - 1244; Viruses - 0; Other Eukaryotes - 1055 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6234509..6236059 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39910.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKGVVSEKV KLVVALITLQ FCFAGFHIVS RVALNIGVSK VVYPVYRNLL ALLLIGPFAY FFEKKERPPL TISLLAQFFF LALIGITANQ GFYLLGLYYA 101: TPTFASAMQN SVPAITFIMA CALRLEHIDL VRKHGVAKVL GTLVSIGGAT VITLYRGFPI FDQGLNMQKE EVVGSDNSHS LTLGWLYLMG HCLSWAGWMV 201: LQAPVLKQYP AKLTLTSFTC FFGLIQFLVI ALFVETDLNN WIIVSWEELF TILYAGIIAS GLVVYLQTWC IYKSGPVFVA VFQPLQTLLV AAMAFLILGD 301: QLYSGGIVGA VFIMLGLYLV LWGKNEERKL ALEESQQDPE SLTKHLLEAQ HKKSNSESEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)