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AT3G18140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.834
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G22040.1); Has 76534 Blast hits to 29814 proteins in 808 species: Archae - 88; Bacteria - 10199; Metazoa - 30987; Fungi - 16399; Plants - 9158; Viruses - 0; Other Eukaryotes - 9703 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPVDeggNOG:KOG0315EMBL:AB020749EMBL:AY087463EMBL:BT002312EMBL:CP002686EnsemblPlants:AT3G18140
EnsemblPlants:AT3G18140.1entrez:821339ExpressionAtlas:Q9LV27Gene3D:2.130.10.10GeneID:821339GO:GO:0005768GO:GO:0016020
GO:GO:0048571GO:GO:1900088GO:GO:1900091Gramene:AT3G18140.1hmmpanther:PTHR19842IntAct:Q9LV27InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472OMA:AGHHTVKPfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9LV27PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
Reactome:R-ATH-3371571RefSeq:NP_188442.1scanprosite:PS00678SMART:SM00320SMR:Q9LV27STRING:3702.AT3G18140.1SUPFAM:SSF50978
TAIR:AT3G18140UniGene:At.6055UniProt:Q9LV27
Coordinates (TAIR10) chr3:-:6212743..6214567
Molecular Weight (calculated) 34311.70 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.29
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)