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AT3G18130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : receptor for activated C kinase 1C
Curator
Summary (TAIR10)
Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.
Computational
Description (TAIR10)
receptor for activated C kinase 1C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 88582 Blast hits to 37057 proteins in 965 species: Archae - 74; Bacteria - 10338; Metazoa - 34853; Fungi - 20136; Plants - 11319; Viruses - 6; Other Eukaryotes - 11856 (source: NCBI BLink).
Protein Annotations
BioGrid:6671eggNOG:ENOG410XQGZeggNOG:KOG0279EMBL:AB020749EMBL:AY050338EMBL:AY101529EMBL:CP002686
EnsemblPlants:AT3G18130EnsemblPlants:AT3G18130.1entrez:821338Gene3D:2.130.10.10GeneID:821338Genevisible:Q9LV28GO:GO:0004871
GO:GO:0005078GO:GO:0005730GO:GO:0009845GO:GO:0009967GO:GO:0048364GO:GO:0048367GO:GO:0071215
Gramene:AT3G18130.1hmmpanther:PTHR19868hmmpanther:PTHR19868:SF0HOGENOM:HOG000091643InParanoid:Q9LV28IntAct:Q9LV28InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT3G18130KO:K14753OMA:KHESEMA
PaxDb:Q9LV28Pfam:PF00400Pfam:Q9LV28Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LV28PRIDE:Q9LV28
PRINTS:PR00320PRO:PR:Q9LV28PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9LV28Proteomes:UP000006548
RefSeq:NP_188441.1scanprosite:PS00678SMART:SM00320SMR:Q9LV28STRING:3702.AT3G18130.1SUPFAM:SSF50978TAIR:AT3G18130
tair10-symbols:RACK1C_ATUniGene:At.22741UniProt:Q9LV28
Coordinates (TAIR10) chr3:-:6211109..6212371
Molecular Weight (calculated) 35829.40 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.17
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)