AT3G18100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 4r1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the R2R3 transcription factor gene family. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 22862 Blast hits to 8555 proteins in 571 species: Archae - 0; Bacteria - 1576; Metazoa - 2254; Fungi - 1468; Plants - 12920; Viruses - 9; Other Eukaryotes - 4635 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6200689..6204583 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96089.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||||||
| Length | 847 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD QFASKTGSIE PEGVGGGEIP SDSENEDDFE MLRTIKSQLA SSKDAGRSSG PPMGLSLLSD 101: SESEDDFEMI RSIKSQLSLS MDVSLPPIGL SDDEEDDAFE TLRAIRRRFS AYKNFDSEGK FMNDSHGKKK QVHNSDNEPS SEILSRSNTC ESFPDHGKSV 201: VTVPDSEDVQ DGHMPAASSS FPEAARAFVD AIRRNRAYQK FLRGKLAEIE ATIEQNEKHK KNVRIVKDFQ ASCKRITKLA LCQRKDPRVE LISTRKSGPC 301: DSSEVIGPCD SFEGNDKKIS PLTLGPAENP CVENYRMALE KYPISVKRRK WSTEENKNLA KGLKQEVQKI LLSEAIERSS DLEGATYDID TINESIGNLE 401: ITPEMIRQFL PKINWDSLDI KDRSAAECEA RWMSSEDPLI NHGPWTAAED KNLLRTIEQT SLTDWVDIAV SLGTNRTPFQ CLARYQRSLN PSILKKEWTA 501: EEDDQLRTAV ELFGEKDWQS VANVLKGRTG TQCSNRWKKS LRPTRKGTWS LEEDKRVKVA VTLFGSQNWH KISQFVPGRT QTQCRERWLN CLDPKVNRGK 601: WTEEEDEKLR EAIAEHGYSW SKVATNLSCR TDNQCLRRWK RLYPHQVALL QEARRLQKEA SVGNFVDRES ERPALVTSPI LALPDISLEP EPDSVALKKK 701: RKAKQKKSDA ERQPKRRRKG LKNCSGDVCR QENETVCENE PNNGGEERML ALECHDEIQD NAKEKPKQRR KSVAETVCEN EPNNGGEERM LALECDNEIQ 801: DNAKEKRKRR RKSVAETSNN TTGLKKLTPR RRKISAVVPI KNQDAPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)