suba logo
AT3G17950.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1REeggNOG:ENOG410YUDZEMBL:AB019230EMBL:AY600573EMBL:AY600574EMBL:AY649291EMBL:CP002686
EnsemblPlants:AT3G17950EnsemblPlants:AT3G17950.1entrez:820807GeneID:820807Genevisible:Q6DR24hmmpanther:PTHR33544hmmpanther:PTHR33544:SF5
HOGENOM:HOG000239457InParanoid:Q6DR24IntAct:Q6DR24iPTMnet:Q6DR24KEGG:ath:AT3G17950OMA:ADFLCDGPaxDb:Q6DR24
Pfam:Q6DR24PhylomeDB:Q6DR24PRIDE:Q6DR24PRO:PR:Q6DR24Proteomes:UP000006548RefSeq:NP_001030719.1RefSeq:NP_188422.1
STRING:3702.AT3G17950.1TAIR:AT3G17950UniGene:At.50675UniProt:Q6DR24
Coordinates (TAIR10) chr3:+:6146311..6147169
Molecular Weight (calculated) 22902.40 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.64
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)