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AT3G17930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ3ZeggNOG:ENOG4111X28EMBL:AY039550EMBL:AY093751
EMBL:CP002686EnsemblPlants:AT3G17930EnsemblPlants:AT3G17930.1entrez:819775
GeneID:819775GO:GO:0009535GO:GO:0010190GO:GO:0016021
Gramene:AT3G17930.1hmmpanther:PTHR35734hmmpanther:PTHR35734:SF1IntAct:Q94BY7
InterPro:IPR021562KEGG:ath:AT3G17930ncoils:CoilOMA:LGWISTY
Pfam:PF11460Proteomes:UP000006548RefSeq:NP_566593.1STRING:3702.AT3G17930.1
TAIR:AT3G17930TMHMM:TMhelixUniGene:At.71140UniGene:At.8042
UniProt:Q94BY7
Coordinates (TAIR10) chr3:-:6142307..6143246
Molecular Weight (calculated) 20914.20 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.22
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)