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AT3G17900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF46eggNOG:ENOG4110TSAEMBL:AF361586EMBL:AY143949
EMBL:CP002686EnsemblPlants:AT3G17900EnsemblPlants:AT3G17900.1entrez:821058
GeneID:821058Gramene:AT3G17900.1hmmpanther:PTHR36034HOGENOM:HOG000083562
KEGG:ath:AT3G17900OMA:PRVSRDLPhylomeDB:Q9ASZ4Proteomes:UP000006548
RefSeq:NP_566591.1STRING:3702.AT3G17900.1TAIR:AT3G17900UniGene:At.8039
UniProt:Q9ASZ4
Coordinates (TAIR10) chr3:+:6128983..6133069
Molecular Weight (calculated) 91585.80 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.48
Length 838 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFLLRSASS ATHRPPVIEP PATPPQPPPE TAKPGVTLEG LIAEEHFPQY PSVDEDLDRV GDGSGDLDGN GESNAKSGGS GMERFSDVSE EQGWIAIPYK
101: EIPDNWSESV DIHSLRSLDR SFVFPGEQIQ ILACLSESKG DTEIITPFKV AEVMSRTGQR KVSDKQNGDM SDGASTPSGD GEMSPDAQFA TQNGDSPCKE
201: SLDSQKDLSD GESILRMEDH KRRTEDLLSR FQKSHFFVRI AESGEPLWSK KSSLVADTEM DEERKRTKSR PCVSAFVDRG DFDPNVSGGV ARSKAKCCAL
301: PNGDIVVSLQ VYIVDCPKEP IIEILQFEKH QDQDQNPEND KDPYGNLLKW LIPLDNTISQ QPRSLPPPIT PSPSISSTAH KPAISSTSGS QLFSFGHFRS
401: YSMSALPPNT APVTGPIKTQ SSKPSFDIED WDSYSGQTVR NGQKSGTEEL LSFRGVALER DRFSVRCGLE GICIPGRRWR RKLEIIQPIE INSFAADCNT
501: DDLLCVQIKN VAPTHAPDIV IYIDAITIVF EEAGKNASPS SVPIACIEAG NEHSLPNLTL RKGEEHSFIV KPAFSVGSNL KPSAARNKLK SSSLSLPTVN
601: FERKGSGLSG DQYAVMVSCR CNYTESRLFF KQRTKWRPRV SRDLMISVAS EMSGEPCGPH GRASQLPVQI LTLQASNLTS EDLSLTVLAP ASFTSPPTVV
701: SLNSTPTTPI SPFLGFSDFT ERVQNEKRNT TVRKQQSLPP IPLETRTENN TNGESSNPSD VVPKSGLGCT HLWLQSRVPL GCVPSKSTAT IKLELLPLTD
801: GIITLDTLQI HAKEKGRRYI PEQSLKINAT SSISSGIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)