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AT3G17880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.946
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraticopeptide domain-containing thioredoxin
Curator
Summary (TAIR10)
Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.
Computational
Description (TAIR10)
tetraticopeptide domain-containing thioredoxin (TDX); FUNCTIONS IN: protein binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like (InterPro:IPR017936), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: HSP70-interacting protein 1 (TAIR:AT4G22670.1); Has 25378 Blast hits to 23097 proteins in 2986 species: Archae - 386; Bacteria - 12513; Metazoa - 3855; Fungi - 1480; Plants - 2453; Viruses - 7; Other Eukaryotes - 4684 (source: NCBI BLink).
Protein Annotations
BioGrid:6389DIP:DIP-48783NeggNOG:ENOG410XR19eggNOG:KOG0907eggNOG:KOG1308EMBL:AB019230EMBL:AK175494
EMBL:AK227340EMBL:AY064251EMBL:AY064252EMBL:AY084415EMBL:BT009704EMBL:CP002686EnsemblPlants:AT3G17880
EnsemblPlants:AT3G17880.1entrez:821056Gene3D:1.25.40.10Gene3D:3.40.30.10GeneID:821056Genevisible:Q8VWG7GO:GO:0005623
GO:GO:0006457GO:GO:0010286GO:GO:0016671GO:GO:0030544GO:GO:0045454GO:GO:0051259hmmpanther:PTHR22904
hmmpanther:PTHR22904:SF382HOGENOM:HOG000150639InParanoid:Q8VWG7InterPro:IPR011990InterPro:IPR012336InterPro:IPR013026InterPro:IPR013766
InterPro:IPR017937InterPro:IPR019734iPTMnet:Q8VWG7KEGG:ath:AT3G17880ncoils:CoilOMA:RLCKEREPaxDb:Q8VWG7
Pfam:PF00085Pfam:PF13414Pfam:Q8VWG7Pfscan:PS50005Pfscan:PS50293Pfscan:PS51352PhylomeDB:Q8VWG7
PRIDE:Q8VWG7PRO:PR:Q8VWG7PROSITE:PS00194PROSITE:PS50005PROSITE:PS50293PROSITE:PS51352ProteinModelPortal:Q8VWG7
Proteomes:UP000006548Reactome:R-ATH-3371453RefSeq:NP_001078175.1RefSeq:NP_188415.2scanprosite:PS00194SMART:SM00028SMR:Q8VWG7
STRING:3702.AT3G17880.1SUPFAM:SSF48452SUPFAM:SSF52833TAIR:AT3G17880tair10-symbols:ATHIP2tair10-symbols:ATTDXtair10-symbols:HIP
tair10-symbols:TDXUniGene:At.28303UniProt:Q8VWG7
Coordinates (TAIR10) chr3:+:6123534..6126113
Molecular Weight (calculated) 42848.40 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.71
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDAIQVAEL RRFVEQLKLN PSILHDPSLV FFKEYLRSLG AQVPKIEKTE RDYEDKAETK PSFSPKHDDD DDDIMESDVE LDNSDVVEPD NEPPQPMGDP
101: TAEVTDENRD DAQSEKSKAM EAISDGRFDE AIEHLTKAVM LNPTSAILYA TRASVFLKVK KPNAAIRDAN VALQFNSDSA KGYKSRGMAK AMLGQWEEAA
201: ADLHVASKLD YDEEIGTMLK KVEPNAKRIE EHRRKYQRLR KEKELQRAER ERRKQQEAQE REAQAALNDG EVISIHSTSE LEAKTKAAKK ASRLLILYFT
301: ATWCGPCRYM SPLYSNLATQ HSRVVFLKVD IDKANDVAAS WNISSVPTFC FIRDGKEVDK VVGADKGSLE QKIAQHSSSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)