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AT3G17860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 3
Curator
Summary (TAIR10)
JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.
Computational
Description (TAIR10)
jasmonate-zim-domain protein 3 (JAZ3); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 657 Blast hits to 387 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
Protein Annotations
BioGrid:6388DIP:DIP-40532NeggNOG:ENOG410IYU0eggNOG:ENOG410XTREEMBL:AB019230EMBL:AF372907EMBL:AK222169
EMBL:AY085082EMBL:BT003044EMBL:CP002686EnsemblPlants:AT3G17860EnsemblPlants:AT3G17860.1entrez:821055ExpressionAtlas:Q9LVI4
GeneID:821055Genevisible:Q9LVI4GO:GO:0003714GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006952
GO:GO:0009611GO:GO:0009867GO:GO:0031347GO:GO:0042802GO:GO:1903507GO:GO:2000022hmmpanther:PTHR33077
hmmpanther:PTHR33077:SF7HOGENOM:HOG000015145InParanoid:Q9LVI4IntAct:Q9LVI4InterPro:IPR010399InterPro:IPR018467KEGG:ath:AT3G17860
KO:K13464OMA:GMNWSFSPaxDb:Q9LVI4Pfam:PF06200Pfam:PF09425Pfam:Q9LVI4Pfscan:PS51320
PhylomeDB:Q9LVI4PRIDE:Q9LVI4PRO:PR:Q9LVI4PROSITE:PS51320ProteinModelPortal:Q9LVI4Proteomes:UP000006548RefSeq:NP_001078174.1
RefSeq:NP_566590.1SMART:SM00979STRING:3702.AT3G17860.1TAIR:AT3G17860tair10-symbols:JAI3tair10-symbols:JAZ3tair10-symbols:TIFY6B
UniGene:At.8035UniProt:Q9LVI4
Coordinates (TAIR10) chr3:+:6119968..6122691
Molecular Weight (calculated) 37748.30 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.46
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)