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AT3G17810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyrimidine 1
Curator
Summary (TAIR10)
Encodes a protein predicted to have dihydropyrimidine dehydrogenase activity. Its activity has not been demonstrated in vivo, but, it is required for efficient uracil catabolism in Arabidopsis. It localizes to the plastid.
Computational
Description (TAIR10)
pyrimidine 1 (PYD1); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, dihydropyrimidine dehydrogenase (NADP+) activity; INVOLVED IN: 'de novo' pyrimidine base biosynthetic process, uracil catabolic process, cellular response to nitrogen levels; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydroorotate dehydrogenase, class 1/ 2 (InterPro:IPR012135), Dihydroorotate dehydrogenase, class 1, core (InterPro:IPR005720); Has 5953 Blast hits to 5953 proteins in 1914 species: Archae - 176; Bacteria - 4342; Metazoa - 263; Fungi - 99; Plants - 89; Viruses - 0; Other Eukaryotes - 984 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G17810-MONOMERBioCyc:MetaCyc:AT3G17810-MONOMEREC:1.3.1.2eggNOG:COG0167eggNOG:KOG1799EMBL:AB019230EMBL:AF545062
EMBL:AY035029EMBL:AY059103EMBL:CP002686EnsemblPlants:AT3G17810EnsemblPlants:AT3G17810.1entrez:821049Gene3D:3.20.20.70
GeneID:821049Genevisible:Q9LVI9GO:GO:0004152GO:GO:0006207GO:GO:0006212GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0017113GO:GO:0019483GO:GO:0043562Gramene:AT3G17810.1gramene_pathway:1.3.1.2gramene_pathway:PWY-3982
gramene_plant_reactome:1119297gramene_plant_reactome:6875586hmmpanther:PTHR11938hmmpanther:PTHR11938:SF87HOGENOM:HOG000225106InterPro:IPR005720InterPro:IPR013785
KEGG:ath:AT3G17810KO:K00207OMA:MVPCVEEPaxDb:Q9LVI9Pfam:PF01180Pfam:Q9LVI9PhylomeDB:Q9LVI9
PRIDE:Q9LVI9PRO:PR:Q9LVI9ProteinModelPortal:Q9LVI9Proteomes:UP000006548Reactome:R-ATH-73621RefSeq:NP_188408.1SMR:Q9LVI9
STRING:3702.AT3G17810.1SUPFAM:SSF51395TAIR:AT3G17810tair10-symbols:PYD1TIGRfam:TIGR01037TIGRFAMs:TIGR01037UniGene:At.24647
UniPathway:UPA00131UniProt:Q9LVI9
Coordinates (TAIR10) chr3:+:6094279..6096289
Molecular Weight (calculated) 46849.20 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.28
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMSFALNR FSGLSSKTTL SADFDPSSRR SFLPPTRVGL KISSAAESEP DLSVTVNGLK MPNPFVIGSG PPGTNYTVMK RAFDEGWGAV IAKTVSLDAS
101: KVINVTPRYA RLRTGSNGSA KTDVIGWQNI ELISDRPLET MLKEFERLKK EYPDRILIAS VMEEYNKTAW EELIDRVEQT GVDALEINFS CPHGMPERRM
201: GAAVGQDCAL LDEVCGWINA KATVPVWAKM TPNITDITEP ARVSLKSGCE GIAAINTIMS VMGIDMKTLR PEPCVEGYST PGGYSYKAVR PIALAKVMNI
301: AKMMKSEFSE DRSLSGIGGV ETGYDAAEFI LLGSNTVQVC TGVMMHGYGH VKTLCAELKD FMKQHNFSTI EEFRGHSLQY FTTHTDLVKR QKEAVEQRKA
401: EKRGLKSDKD WTGDGFVKET ESMVSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)