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AT3G17800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF760)
Curator
Summary (TAIR10)
mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 157 Blast hits to 157 proteins in 32 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE2ReggNOG:ENOG410YDXBEMBL:AB019230EMBL:AK221063EMBL:AK229485EMBL:AY062486EMBL:AY093276
EMBL:AY099554EMBL:CP002686EnsemblPlants:AT3G17800EnsemblPlants:AT3G17800.1EnsemblPlants:AT3G17800.2entrez:821048ExpressionAtlas:Q9LVJ0
GeneID:821048Genevisible:Q9LVJ0GO:GO:0009507GO:GO:0009611GO:GO:0010193GO:GO:0010224hmmpanther:PTHR31808
hmmpanther:PTHR31808:SF4HOGENOM:HOG000240370InterPro:IPR008479KEGG:ath:AT3G17800OMA:TVQDSADPaxDb:Q9LVJ0Pfam:PF05542
PhylomeDB:Q9LVJ0Proteomes:UP000006548RefSeq:NP_001078173.1RefSeq:NP_566588.1STRING:3702.AT3G17800.2TAIR:AT3G17800UniGene:At.22111
UniGene:At.71032UniGene:At.74878UniGene:At.74926UniProt:Q9LVJ0
Coordinates (TAIR10) chr3:-:6091248..6092873
Molecular Weight (calculated) 46069.70 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.31
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)