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AT3G17780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.976
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT1G48440.1); Has 102 Blast hits to 102 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYRWeggNOG:ENOG410YZVQEMBL:AB026646EMBL:AY063848EMBL:AY117324EMBL:CP002686EnsemblPlants:AT3G17780
EnsemblPlants:AT3G17780.1entrez:821046GeneID:821046GO:GO:0005783GO:GO:0006886GO:GO:0016021Gramene:AT3G17780.1
hmmpanther:PTHR12701hmmpanther:PTHR12701:SF20HOGENOM:HOG000239460InterPro:IPR008417KEGG:ath:AT3G17780ncoils:CoilOMA:WKKEHRL
PANTHER:PTHR12701PhylomeDB:Q9LSH0Proteomes:UP000006548RefSeq:NP_188405.1TAIR:AT3G17780TMHMM:TMhelixUniGene:At.27414
UniProt:Q9LSH0
Coordinates (TAIR10) chr3:+:6087016..6088128
Molecular Weight (calculated) 14960.60 Da
IEP (calculated) 8.71
GRAVY (calculated) 0.25
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQWLILSY VVAAEVAIAV ILTLPYPMLL KKRIVSLISL ILNPAASIVA FAGFQLLDIY WKNEHRLLCS SEVCTTTERD RHEKSVYKAQ RNGVLCAAGI
101: LLYWCIFRIC KYHKDLERLE QLEKRYKDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)