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AT3G17740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPGDeggNOG:KOG1972EMBL:AB026646EMBL:AK117337EMBL:BT009690EMBL:CP002686EnsemblPlants:AT3G17740
EnsemblPlants:AT3G17740.1entrez:821042Gene3D:1.25.40.10GeneID:821042Gramene:AT3G17740.1hmmpanther:PTHR13471HOGENOM:HOG000083329
IntAct:Q9LSH4InterPro:IPR003107InterPro:IPR011990InterPro:IPR013633KEGG:ath:AT3G17740OMA:HNREGEEPfam:PF08424
PhylomeDB:Q9LSH4Proteomes:UP000006548RefSeq:NP_188401.1SMART:SM00386STRING:3702.AT3G17740.1SUPFAM:SSF48452TAIR:AT3G17740
UniGene:At.38665UniProt:Q9LSH4
Coordinates (TAIR10) chr3:-:6068003..6072814
Molecular Weight (calculated) 130082.00 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.48
Length 1149 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSNTPEDGDG AQVTTGGLFP VFPTSANSIS AISNAPQWLR NASFTTDLSV INAAASTAPS SSEVEAGDDE DEEGGADGNI GLANQARVYN LVEEEGSLES
0101: DDDKVKRKRE KKKKRKSDNA SDESRSRKSD EYYSKPVKDY YLDTRPDPDN LAYGSIYRMN VPRYKLDNSQ RVPGSGSLRF YLRNRRSSML DTEIDIDSLE
0201: GRAKSDTRYW YAKHAAMERN KNFKRIRLSA ASEAVDSSFD NFIPLEEDVT VPESDEEDVL SKDSMIGASW EDEVLNKTRE FNRVTRERPH DAKAWLAFAD
0301: FQDKVSSMQS QKGVRLQTLE KKISILEKAF ELNPDSEELL LALLKAYRSR DNADVLISRW EKALMQNSAS YKLWREFLCV VQGEFSRFKV SEVRRLYSYA
0401: IQALSSACSK RHRQVDTTSE PLDSAAIQQE LVLVDMLVSL CRFEWQAGYQ ELATALLQAE VEFSIFSPSL LLTEQSKLRL FEHFWSSNGA RVGEEGAFGW
0501: LLWLEKEEEN RQKILKEESS DDNEVGGWTG WTEQVSGRNG DDIASANTGE VDVDRKGLDE EMEDENSKPE DDTEAMLKLL GIDVNTAASD EVKDTSTWVK
0601: WFEEEVSRDH SQWMPTRKAG EFSSVEGMGE GEDEEQLSSV VLYEDINGYL FSLRSKEARL SLVYQFIDFF GAHISPWTSS NSLSWSEKIS SLETFSDSML
0701: ENLRSVHECL SKSDSANCFS LGSLLGGSCD LSMRTEMMKF LRNAILLCLN VFPRNYILEE AVLVAEELFV TNMKTCEVAT MPCQALAKRL LKSDRQDLLL
0801: CGVYAQREAA SGNMKHARRV FDMALTSICG LPKELQCNTP LLCLWYAESE VANSSGSGRD TESSSRAMHI LCYLGSGLAY SPYTSQSSSM QILRARQGFR
0901: EKLKKIQSTW SHGVTDDQSA ALVCSAALFE ELTNDLPGAL EILEHMFSSV LPGRKSQSHQ LELLFNYYVR MLQRHQDDLT LSQLWKPISE GLQLYPLNPE
1001: LYRALVDICN HRMTSHKLRM MFDDYSRKNS SVVVWLFALS YELSKGGSSH RIRGLFERAL AQDTQNNSVI LWRCYIAYEI DIADNPSAAR RIYFRAINAC
1101: PWSKKLWLDG FGKLGSVLTA KEMSDLQEVM RDKELNIRTD IYEILLMQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)