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AT3G17700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide-binding transporter 1
Curator
Summary (TAIR10)
cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.
Computational
Description (TAIR10)
cyclic nucleotide-binding transporter 1 (CNBT1); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 19 (TAIR:AT3G17690.1); Has 2782 Blast hits to 2720 proteins in 214 species: Archae - 0; Bacteria - 20; Metazoa - 1493; Fungi - 0; Plants - 916; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
BioGrid:6370eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AB022219
EMBL:AF148541EMBL:AF148542EMBL:CP002686EnsemblPlants:AT3G17700
EnsemblPlants:AT3G17700.1entrez:821037Gene3D:2.60.120.10GeneID:821037
Genevisible:Q9LD37GO:GO:0005249GO:GO:0009535GO:GO:0009624
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391
GO:GO:0071805Gramene:AT3G17700.1hmmpanther:PTHR10217hmmpanther:PTHR10217:SF475
HOGENOM:HOG000238338InParanoid:Q9LD37InterPro:IPR000595InterPro:IPR005821
InterPro:IPR014710InterPro:IPR018490iPTMnet:Q9LD37KEGG:ath:AT3G17700
KO:K05391OMA:FVLKHANPaxDb:Q9LD37Pfam:PF00520
Pfam:Q9LD37Pfscan:PS50042PhylomeDB:Q9LD37PRIDE:Q9LD37
PRO:PR:Q9LD37PROSITE:PS50042ProteinModelPortal:Q9LD37Proteomes:UP000006548
Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_566585.1
SMR:Q9LD37STRING:3702.AT3G17700.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT3G17700tair10-symbols:ATCNGC20tair10-symbols:CNBT1tair10-symbols:CNGC20
TCDB:1.A.1.5.24TMHMM:TMhelixUniGene:At.6293UniProt:Q9LD37
Coordinates (TAIR10) chr3:+:6049074..6052449
Molecular Weight (calculated) 86955.30 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.11
Length 764 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHNENDDI PMLPISDPSS RTRARAFTSR SRSVSLSNPT SSIEGFDTST VVLGYTGPLR TQRRPPLVQM SGPLTSTRKH EPLFLPHPSS DSVGVSSQPE
101: RYPSFAALEH KNSSEDEFVL KHANLLRSGQ LGMCNDPYCT TCPSYYNRKA AQIPTSRVSA LFDSTFHNAL YDDAKGWARR FASSVNRYLP GIMNPHAKEV
201: QTWTKFFALS CLLAIFIDPL FFFLIKVQEQ NKCIMIDWPM TKAFVAVRSV TDVIFTMNIL LQFRLAYVAR ESTVVGAGQL VSHPKKIALH YLKGKFFLDL
301: FIVMPLPQIL ILWIIPAHLG ASGANYAKNL LRAAVLFQYI PKLYRLLPFL AGQTPTGFIF ESAWANFVIN LLTFMLAGHV VGSCWYLFGL QRVNQCLRNA
401: CGNFGRECQD LIDCGNGNSS VLVRATWKDN ASANACFQED GFPYGIYLKA VNLTNHSNLF TRYSYSLFWG FQQISTLAGN QVPSYFLGEV FFTMGIIGLG
501: LLLFALLIGN MQNFLQALGK RNLEMTLRRR DVEQWMSHRR LPDGIRRRVR EAERFNWAAT RGVNEELLFE NMPDDLQRDI RRHLFKFLKK VRIFSLMDEP
601: ILDAIRERLK QRTYIGSSTV LHRGGLVEKM VFIVRGEMES IGEDGSVLPL YEGDVCGEEL LTWCLERSSV NPDGTRIRMP SKGLLSSRNV RCVTNVEAFS
701: LSVADLEDVT SLFSRFLRSH RVQGAIRYDS PYWRLRAARQ IQVAWRYRRR RLHRLCTPQS SYSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)