AT3G17640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G03440.1); Has 49064 Blast hits to 19347 proteins in 858 species: Archae - 12; Bacteria - 2546; Metazoa - 6658; Fungi - 321; Plants - 36853; Viruses - 0; Other Eukaryotes - 2674 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6032393..6033583 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42922.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYTFFLLLL SLVHSTFSSL APTDRAALQS IRDSLTDMPG SAFFSSWDFT VPDPCSSFSG LTCSSRGRVT GLTLGPNLSG SLSPSISILT HLTQLILYPG 101: SVTGPLPPRF DSLPLLRVIS LTRNRLTGPI PVSFSSLSNL HTLDLSYNQL SGSLPPFLTT LPRLKVLVLA SNHFSNNLKP VSSPLFHLDL KMNQISGQLP 201: PAFPTTLRYL SLSGNSMQGT INAMEPLTEL IYIDLSMNQF TGAIPSSLFS PTISTMFLQR NNFTSIATSN ATSLLPEGSI VDLSHNSISG ELTPALVGAE 301: ALFLNNNRLT GDIPEEYVKS LINGTTKQLF LQHNYFTRFP WNSGLQLPDS VSLCLSYNCM ETDPVVGLST CPIEVAPLLS RPASQCSRFY NHSSTG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)