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AT3G17609.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HY5-homolog
Curator
Summary (TAIR10)
Encodes a homolog of HY5 (HYH). Involved in phyB signaling pathway.
Computational
Description (TAIR10)
HY5-homolog (HYH); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G11260.1); Has 1693 Blast hits to 1693 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 863; Fungi - 250; Plants - 465; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G17609EnsemblPlants:AT3G17609.1entrez:821027hmmpanther:PTHR13301hmmpanther:PTHR13301:SF46ncoils:CoilPfam:PF00170
Pfscan:PS50217scanprosite:PS00036SUPFAM:SSF57959tair10-symbols:HYH
Coordinates (TAIR10) chr3:+:6023971..6024585
Molecular Weight (calculated) 15251.70 Da
IEP (calculated) 10.74
GRAVY (calculated) -1.29
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLQRPNGNS SSSSSHKKHK TAAGSTCVLS SSADDGVNNP ELDQTQNGVS TAKRRRGRNP VDKEYRSLKR LLRNRVSAQQ ARERKKVYVS DLESRANELQ
101: NNNDQLEEKI STLTNENTML RKMLINTRPK TDDNH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)