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AT3G17590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transcription regulatory protein SNF5, putative (BSH)
Curator
Summary (TAIR10)
Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.
Computational
Description (TAIR10)
BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939); Has 591 Blast hits to 429 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 262; Plants - 37; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioGrid:6358eggNOG:ENOG410XSZDeggNOG:KOG1649EMBL:AB022219EMBL:AK117162EMBL:CP002686EMBL:U88061
EnsemblPlants:AT3G17590EnsemblPlants:AT3G17590.1entrez:821025ExpressionAtlas:P93045GeneID:821025GO:GO:0000228GO:GO:0006338
GO:GO:0006351GO:GO:0006355GO:GO:0007049hmmpanther:PTHR10019HOGENOM:HOG000239437InParanoid:P93045IntAct:P93045
InterPro:IPR006939PANTHER:PTHR10019PaxDb:P93045Pfam:P93045Pfam:PF04855PhylomeDB:P93045PRIDE:P93045
PRO:PR:P93045Proteomes:UP000006548RefSeq:NP_566581.1STRING:3702.AT3G17590.2TAIR:AT3G17590tair10-symbols:BSHtair10-symbols:CHE1
UniGene:At.6282UniProt:P93045UniProt:Q2HIG1
Coordinates (TAIR10) chr3:-:6017313..6019591
Molecular Weight (calculated) 27290.50 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.45
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGLVSTGWK GPVKFRMPTA ENLVPIRLDI QFEGQRYKDA FTWNPSDPDN EVVIFAKRTV KDLKLPYAFV TQIAQSIQSQ LSDFRAYEGQ DMYTGEKIIP
101: IKLDLRVNHT LIKDQFLWDL NNFESDPEEF ARTLCKDLGV EDPEVGPAVA FAIREQLYEI AIQSVASARE SRLSKKGRRG SDHGSASKAS GLSMDLMKLF
201: SFKSSVVRKR KDLDVYEPVV DLLTSEEVDA LEAREERHAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)