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AT3G17440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : novel plant snare 13
Curator
Summary (TAIR10)
member of NPSN Gene Family
Computational
Description (TAIR10)
novel plant snare 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 12 (TAIR:AT1G48240.1); Has 481 Blast hits to 465 proteins in 133 species: Archae - 4; Bacteria - 38; Metazoa - 112; Fungi - 19; Plants - 145; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
BioGrid:6341eggNOG:ENOG410IJE9eggNOG:ENOG411023CEMBL:AB028620EMBL:AY084645EMBL:AY099622EMBL:BT001249
EMBL:CP002686EnsemblPlants:AT3G17440EnsemblPlants:AT3G17440.1entrez:821008ExpressionAtlas:Q9LRP1GeneID:821008Genevisible:Q9LRP1
GO:GO:0000149GO:GO:0005484GO:GO:0005886GO:GO:0015031GO:GO:0016021GO:GO:0061025hmmpanther:PTHR21230
hmmpanther:PTHR21230:SF35HOGENOM:HOG000240078InParanoid:Q9LRP1IntAct:Q9LRP1InterPro:IPR000727iPTMnet:Q9LRP1ncoils:Coil
OMA:KVELFDMPaxDb:Q9LRP1Pfam:PF12352Pfam:Q9LRP1Pfscan:PS50192PhylomeDB:Q9LRP1PRIDE:Q9LRP1
PRO:PR:Q9LRP1PROSITE:PS50192ProteinModelPortal:Q9LRP1Proteomes:UP000006548RefSeq:NP_566578.1SMART:SM00397SMR:Q9LRP1
STRING:3702.AT3G17440.1SUPFAM:SSF58038SwissPalm:Q9LRP1TAIR:AT3G17440tair10-symbols:ATNPSN13tair10-symbols:NPSN13TMHMM:TMhelix
UniGene:At.5879UniProt:Q9LRP1
Coordinates (TAIR10) chr3:-:5969909..5972290
Molecular Weight (calculated) 30415.70 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.55
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)