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AT3G17390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
nucleus 0.500
ASURE: nucleus,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosylmethionine synthetase family protein
Curator
Summary (TAIR10)
S-adenosylmethionine synthetase
Computational
Description (TAIR10)
METHIONINE OVER-ACCUMULATOR 3 (MTO3); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: lignin biosynthetic process, response to cold, methionine metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10856 Blast hits to 10849 proteins in 2868 species: Archae - 12; Bacteria - 5440; Metazoa - 373; Fungi - 167; Plants - 707; Viruses - 1; Other Eukaryotes - 4156 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G17390-MONOMERBioGrid:6336EC:2.5.1.6eggNOG:COG0192eggNOG:KOG1506EMBL:AB022216EMBL:AK230129
EMBL:AY037214EMBL:AY087184EMBL:AY120708EMBL:BT000712EMBL:BT002665EMBL:CP002686EnsemblPlants:AT3G17390
EnsemblPlants:AT3G17390.1entrez:821003GeneID:821003Genevisible:Q9LUT2GO:GO:0004478GO:GO:0005524GO:GO:0005618
GO:GO:0005730GO:GO:0005829GO:GO:0005886GO:GO:0006555GO:GO:0006556GO:GO:0006730GO:GO:0009409
GO:GO:0009506GO:GO:0009809GO:GO:0016020GO:GO:0046872Gramene:AT3G17390.1gramene_pathway:2.5.1.6gramene_pathway:ETHYL-PWY
gramene_pathway:PWY-4361-ARAgramene_pathway:PWY-5041gramene_pathway:SAM-PWYHAMAP:MF_00086hmmpanther:PTHR11964hmmpanther:PTHR11964:SF16HOGENOM:HOG000245710
InParanoid:Q9LUT2IntAct:Q9LUT2InterPro:IPR002133InterPro:IPR022628InterPro:IPR022629InterPro:IPR022630InterPro:IPR022631
InterPro:IPR022636KEGG:00270+2.5.1.6KEGG:ath:AT3G17390KO:K00789MINT:MINT-8064905OMA:GQMNGFHPANTHER:PTHR11964
PaxDb:Q9LUT2Pfam:PF00438Pfam:PF02772Pfam:PF02773Pfam:Q9LUT2PhylomeDB:Q9LUT2PIRSF:PIRSF000497
PRIDE:Q9LUT2PRO:PR:Q9LUT2PROSITE:PS00376PROSITE:PS00377ProteinModelPortal:Q9LUT2Proteomes:UP000006548Reactome:R-ATH-156581
Reactome:R-ATH-1614635Reactome:R-ATH-2408508RefSeq:NP_188365.1scanprosite:PS00376scanprosite:PS00377SMR:Q9LUT2STRING:3702.AT3G17390.1
SUPFAM:SSF55973SwissPalm:Q9LUT2TAIR:AT3G17390tair10-symbols:MAT4tair10-symbols:MTO3tair10-symbols:SAMS3TIGRfam:TIGR01034
TIGRFAMs:TIGR01034UniGene:At.5781UniGene:At.70071UniPathway:UPA00315UniProt:Q9LUT2
Coordinates (TAIR10) chr3:-:5952484..5953665
Molecular Weight (calculated) 42798.00 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.25
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MESFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEQIVR KTCREIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEVGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNGT CPWLRPDGKT QVTIEYINES GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RVIVQVSYAI GVPEPLSVFV DSYGTGKIPD KEILEIVKES FDFRPGMISI NLDLKRGGNG RFLKTAAYGH FGRDDADFTW EVVKPLKSNK VQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)