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AT3G17240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lipoamide dehydrogenase 2
Curator
Summary (TAIR10)
lipoamide dehydrogenase precursor
Computational
Description (TAIR10)
lipoamide dehydrogenase 2 (mtLPD2); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast, mitochondrial respiratory chain complex I, mitochondrial matrix; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Mercuric reductase (InterPro:IPR000815); BEST Arabidopsis thaliana protein match is: mitochondrial lipoamide dehydrogenase 1 (TAIR:AT1G48030.2); Has 42670 Blast hits to 42637 proteins in 3263 species: Archae - 1164; Bacteria - 31277; Metazoa - 912; Fungi - 500; Plants - 625; Viruses - 0; Other Eukaryotes - 8192 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2079-MONOMERBioCyc:RETL1328306-WGS:GSTH-3969-MONOMEREC:1.8.1.4eggNOG:COG1249eggNOG:KOG1335EMBL:AB022216EMBL:AF228640
EMBL:AJ223804EMBL:AY087203EMBL:BT024578EMBL:CP002686EnsemblPlants:AT3G17240EnsemblPlants:AT3G17240.1EnsemblPlants:AT3G17240.3
entrez:820984Gene3D:3.30.390.30Gene3D:3.50.50.60GeneID:820984Genevisible:Q9M5K2GO:GO:0004148GO:GO:0005507
GO:GO:0005524GO:GO:0005739GO:GO:0005747GO:GO:0005759GO:GO:0008270GO:GO:0009507GO:GO:0045454
GO:GO:0046686GO:GO:0048046GO:GO:0050660GO:GO:0050897hmmpanther:PTHR22912hmmpanther:PTHR22912:SF148HOGENOM:HOG000276708
InParanoid:Q9M5K2IntAct:Q9M5K2InterPro:IPR004099InterPro:IPR006258InterPro:IPR012999InterPro:IPR016156InterPro:IPR023753
iPTMnet:Q9M5K2KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
KEGG:ath:AT3G17240KO:K00382OMA:HMASAECPaxDb:Q9M5K2Pfam:PF02852Pfam:PF07992Pfam:Q9M5K2
PhylomeDB:Q9M5K2PRIDE:Q9M5K2PRO:PR:Q9M5K2PROSITE:PS00076ProteinModelPortal:Q9M5K2Proteomes:UP000006548Reactome:R-ATH-6783984
Reactome:R-ATH-70268Reactome:R-ATH-70895Reactome:R-ATH-71064Reactome:R-ATH-71403RefSeq:NP_566570.3RefSeq:NP_566571.1RefSeq:NP_851005.1
scanprosite:PS00076SMR:Q9M5K2STRING:3702.AT3G17240.1SUPFAM:SSF51905SUPFAM:SSF55424TAIR:AT3G17240tair10-symbols:mtLPD2
TIGRfam:TIGR01350TIGRFAMs:TIGR01350UniGene:At.20793UniProt:Q9M5K2
Coordinates (TAIR10) chr3:-:5890278..5892166
Molecular Weight (calculated) 53989.20 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.02
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMASLARRK AYFLTRNISN SPTDAFRFSF SLTRGFASSG SDDNDVVIIG GGPGGYVAAI KAAQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHVFANH GVKVSSVEVD LPAMLAQKDT AVKNLTRGVE GLFKKNKVNY VKGYGKFLSP SEVSVDTIDG ENVVVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL TEIPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAADIV PAMDGEIRKQ FQRSLEKQKM KFMLKTKVVG VDSSGDGVKL IVEPAEGGEQ
301: TTLEADVVLV SAGRTPFTSG LDLEKIGVET DKGGRILVNE RFSTNVSGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTYPEVAS
401: VGKTEEQLKK EGVSYNVGKF PFMANSRAKA IDTAEGMVKI LADKETDKIL GVHIMSPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EAIKEAAMAT
501: YDKPIHM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)