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AT3G17170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1B/ribosomal protein S6 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
REGULATOR OF FATTY-ACID COMPOSITION 3 (RFC3); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 13593 Blast hits to 10425 proteins in 2441 species: Archae - 19; Bacteria - 4805; Metazoa - 3511; Fungi - 908; Plants - 375; Viruses - 253; Other Eukaryotes - 3722 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0360eggNOG:ENOG410IH94EMBL:AB057424EMBL:AY074580EMBL:AY101540EMBL:CP002686EnsemblPlants:AT3G17170
EnsemblPlants:AT3G17170.1entrez:820974Gene3D:3.30.70.60GeneID:820974GO:GO:0003735GO:GO:0003746GO:GO:0005840
GO:GO:0019843Gramene:AT3G17170.1HAMAP:MF_00360hmmpanther:PTHR21011hmmpanther:PTHR21011:SF4InterPro:IPR000529InterPro:IPR014717
InterPro:IPR020814KEGG:ath:AT3G17170ncoils:CoilOMA:NIQMESDPfam:PF01250PhylomeDB:Q948R9Proteomes:UP000006548
RefSeq:NP_566568.1SMR:Q948R9STRING:3702.AT3G17170.1SUPFAM:SSF54995TAIR:AT3G17170tair10-symbols:RFC3TIGRfam:TIGR00166
TIGRFAMs:TIGR00166UniGene:At.48673UniGene:At.71146UniProt:Q948R9
Coordinates (TAIR10) chr3:-:5853186..5854853
Molecular Weight (calculated) 36277.60 Da
IEP (calculated) 4.23
GRAVY (calculated) -1.06
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLLHASSS LVSLRPRIDG RDSFINPSRV CLNPSLGRRG SKPLPLVAAA KKKKSKKDDN HNFSARPDEA TGPFPESILL KEKKIDEEGD LLPEFADAEE
101: KELYQFLDLQ LQSDLNEERM RHYEVVYLIH EKHAEEVESI NQKVQDYLKE KKGKVWRFSD WGMRRLAYKI QKAENAHYIL MNFEIEAKYL NEFKGLLDSD
201: ERVIRHLVMK RDEAITEDCP PPPEFHSVRA GDEYYDDDEE EEIEEDEDEG EGEDEEDADN IEYEVDDDGN VVMVLYGDEE EGEEEEDGAS EQEEGQDKST
301: NGRRETRRTV NVGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)