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AT3G17130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: cell wall / vacuolar inhibitor of fructosidase 1 (TAIR:AT1G47960.1); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEGKeggNOG:ENOG41118CIEMBL:AB026636EMBL:CP002686EnsemblPlants:AT3G17130EnsemblPlants:AT3G17130.1entrez:820970
Gene3D:1.20.140.40GeneID:820970GO:GO:0004857Gramene:AT3G17130.1hmmpanther:PTHR31080hmmpanther:PTHR31080:SF23HOGENOM:HOG000090829
InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT3G17130OMA:KFNIPQAPfam:PF04043PhylomeDB:Q9LSN4
Proteomes:UP000006548RefSeq:NP_188338.1SMART:SM00856SMR:Q9LSN4STRING:3702.AT3G17130.1SUPFAM:SSF101148TAIR:AT3G17130
TIGRfam:TIGR01614TIGRFAMs:TIGR01614UniGene:At.49611unipathway:UPA00545UniProt:Q9LSN4
Coordinates (TAIR10) chr3:-:5844495..5845046
Molecular Weight (calculated) 19454.60 Da
IEP (calculated) 5.74
GRAVY (calculated) 0.17
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRSSTVTSL PCLSLFLLLL LPSVVQSSDD LIDKICQATP FCDLCEASLR PFSPSPSDPK SLGAAMASVV LGNMTDTLGY IQSLIKHAHD PAAERALAQC
101: AELYRPVVKF NIPQAMEAMQ GGKFGFAIYV LGDAEKQTDS CQKGITNAGA DDESSVAVTA RNKLVKNLCD VAISVLKSLM NGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)