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AT3G17120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0ZIeggNOG:ENOG410YW44EMBL:AB026636EMBL:AF462799
EMBL:CP002686EnsemblPlants:AT3G17120EnsemblPlants:AT3G17120.1EnsemblPlants:AT3G17120.2
entrez:820969GeneID:820969GO:GO:0016021Gramene:AT3G17120.1
Gramene:AT3G17120.2hmmpanther:PTHR34188hmmpanther:PTHR34188:SF1HOGENOM:HOG000237794
KEGG:ath:AT3G17120OMA:MSPDNKPPhylomeDB:Q9LSN5Proteomes:UP000006548
RefSeq:NP_188337.1RefSeq:NP_974326.1TAIR:AT3G17120TMHMM:TMhelix
UniGene:At.38788UniProt:Q9LSN5
Coordinates (TAIR10) chr3:+:5842410..5843246
Molecular Weight (calculated) 23311.90 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.45
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMSLDFDVD LEKGIIDCDN VYTKSPEKPM SPDNKPVITG EESVGSLEND TSPVQCGINK PGWGRSDRKE KRKKSASKPP RPPRGPSLDA ADQKLIREIA
101: ELAMLKRARI ERMRALKKSR AAKAASAASS LGNVLATLFT AIFFFVLVFQ GLSPRAAGSS GKSHLVVAGK ANGGFVSVQY AGNPSASEPD GGYTGPVLAQ
201: RPNLLKPVSG LENEKKSSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)