suba logo
AT3G17100.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G06590.2); Has 168 Blast hits to 168 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J238eggNOG:ENOG410YRF4EMBL:AB026636EMBL:AK230300EMBL:AK317151EMBL:AY045684EMBL:AY057736
EMBL:CP002686EnsemblPlants:AT3G17100EnsemblPlants:AT3G17100.1EnsemblPlants:AT3G17100.2entrez:820967ExpressionAtlas:Q9LSN7GeneID:820967
Genevisible:Q9LSN7GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT3G17100.1
Gramene:AT3G17100.2hmmpanther:PTHR33124hmmpanther:PTHR33124:SF12HOGENOM:HOG000237706InParanoid:Q9LSN7InterPro:IPR011598KEGG:ath:AT3G17100
OMA:HKRQRISPaxDb:Q9LSN7Pfam:Q9LSN7Pfscan:PS50888PhylomeDB:B9DGH0PhylomeDB:Q9LSN7PRIDE:Q9LSN7
PRO:PR:Q9LSN7PROSITE:PS50888ProteinModelPortal:Q9LSN7Proteomes:UP000006548RefSeq:NP_566567.1RefSeq:NP_850601.1STRING:3702.AT3G17100.1
SUPFAM:SSF47459TAIR:AT3G17100UniGene:At.22409UniGene:At.67721UniProt:B9DGH0UniProt:Q9LSN7
Coordinates (TAIR10) chr3:+:5831552..5832244
Molecular Weight (calculated) 25312.80 Da
IEP (calculated) 12.14
GRAVY (calculated) -0.62
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MESISPVSNQ LLQPTTTSSN SDRSRRKRKK KSSPSSVEKS PSPSISLEKW RSEKQQQIYS TKLVHALREL RISQQPSSSS SSSIPRGGRA VREVADRALA
101: VAARGKTLWS RAILSKAVKL KFRKHKRQRI SNPTTTTLTT GSIRSKKQRA TVLRLKAKGL PAVQRKVKVL SRLVPGCRKQ SLPVVLEETT DYIAAMEMQI
201: RTMTAILSAV SSSPPPPTPG HEGGQTHMLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)